java -jar ../../diCal2.jar --paramFile mutRec.param --vcfFile 'contig.0.vcf,contig.1.vcf' --vcfFilterPassString PASS --vcfReferenceFile 'output.ref,output.ref' --lociPerHmmStep 1000 --configFile exp_growth.config --demoFile exp_growth.demo --ratesFile exp_growth.rates --intervalType loguniform --intervalParams '8,0.01,4' --compositeLikelihood pcl --startPoint '0.8,2' --bounds '0.01,20;0.05,50' --numberIterationsEM 10 --numberIterationsMstep 5 --seed 4711 --verbose
