README.md
pyproject.toml
bin/base-frequencies.py
bin/connected-components.py
bin/consistency-basic.py
bin/consistency-heatmap.py
bin/coverage-and-significant-locations.py
bin/create-mid-experiment-data.py
bin/create-reads.py
bin/mid-cluster.py
bin/multiple-significant-base-frequencies.py
bin/mutate-reads.py
bin/plot-reads-against-all-references.py
bin/random-nt-sequence.py
bin/significant-base-frequencies.py
bin/simulation-significant-base-frequencies.sh
src/midtools/__init__.py
src/midtools/analysis.py
src/midtools/clusterAnalysis.py
src/midtools/clusters.py
src/midtools/connectedComponentAnalysis.py
src/midtools/distances.py
src/midtools/entropy.py
src/midtools/greadyAnalysis.py
src/midtools/match.py
src/midtools/mutate.py
src/midtools/nid.py
src/midtools/offsets.py
src/midtools/options.py
src/midtools/plotting.py
src/midtools/pqueue.py
src/midtools/read.py
src/midtools/reference.py
src/midtools/utils.py
src/midtools.egg-info/PKG-INFO
src/midtools.egg-info/SOURCES.txt
src/midtools.egg-info/dependency_links.txt
src/midtools.egg-info/requires.txt
src/midtools.egg-info/top_level.txt
test/test_alignedRead.py
test/test_clusters.py
test/test_distances.py
test/test_mutate.py
test/test_offsets.py
test/test_pqueue.py