oncoref/__init__.py,sha256=oPr47ExEbv4t31626cLOx8S6Fwoox1oBM7xmgf-tzr4,22797
oncoref/_reference_sources.py,sha256=yUIf58J8JXSemdX7Owdjm4p3nUCt6aThwvoip5wBvfE,1067
oncoref/antigen_coverage.py,sha256=2KLG6r303vL_roXH-B8Ahdawa5hP4eoRHiYJWbawfqk,2901
oncoref/apd1.py,sha256=tEBcttiGbNv6Gd7XrMbU_-y6RmHa421RWp_GwYMENhU,8947
oncoref/cancer_genes.py,sha256=Cf1w7iK2_HNKVtvEKBWkioQHvH3k2NHgAyZLRLBQ7LU,6086
oncoref/cancer_ontology.py,sha256=ybHAKHu58hqx_XoMyOdTEAf8-1wlnsmsUucdLZXx7Nk,4199
oncoref/cancer_types.py,sha256=nXG_WGYrGNNrlqgB5UVFNd2oQgq10usO_o8pt8CTeDo,98589
oncoref/catalog.py,sha256=GRmL0xG6_evjrrY81oJ5FPixmUIIJu6StIR0KIEMHDs,12603
oncoref/cli.py,sha256=auwhDf-shliqWbOXMrz8D7opisSDrVxS1BkmRdfKkkI,24800
oncoref/cohorts.py,sha256=4hf3O0JjqT6AG-b8JYft476_nBLpe6PVm1JoEI_hCHg,1199
oncoref/coverage.py,sha256=IP88lfhDieUa4NgYwOVfY-kSB4bCTSHr9Q3NnK2Q0HQ,35900
oncoref/cta.py,sha256=7h9Dqngg0SHb1ryrKi6eRHMzbblvNRyasJqxK0Xw54k,32521
oncoref/cta_coverage.py,sha256=lWJwWGpqQsHw9ZSIMMbsGoyH4QgDtwMBIjaMgrB_E3M,4145
oncoref/cta_curation_plots.py,sha256=vle8hi6B6gtple1Uw6mluF3dcCb0rFEQQHjBQPvzeak,8696
oncoref/cta_peptides.py,sha256=XKA7DFnTTgTjxACoSV19-Vby_7luLJlb3XlwHfxsfyU,1534
oncoref/cta_regen.py,sha256=HP7gIHEvpgUWcY9Ps3BRSpL_kG0gpmMzLXLFSAEvQqE,22874
oncoref/cta_tissues.py,sha256=p0LYszh1MZdG5WbqpjWOdBn59QgEZyibrRacxt2Fccc,6337
oncoref/data_bundle.py,sha256=Goon8BKEAiVWOovnF0k6n-5kKtP5ACHolqXXaElc7Yc,36227
oncoref/data_manifest.py,sha256=dgWxr_fr9mCvE-JJDGf9g1Zi_NKlHCrn9fiaTdzpJ10,18915
oncoref/drivers.py,sha256=A0HgxOqI4VXGVbuDpIbFbO7-xVmEABGYCA4qPpABo8s,1875
oncoref/expression.py,sha256=bz5mlVc29wZkJTiuvwQ-XGD5cBL0qxXvGCeSxxoTvnY,263678
oncoref/expression_builders.py,sha256=6IQCvvGZKFAUKoZZ1GRfL0wFVTdAd0W20jAXSR-7Fcg,220333
oncoref/expression_engine.py,sha256=KyZ0xSEUCNGJWlTJYwYc8OngDfodUsZ_DE-BFT3B5DU,25810
oncoref/expression_registry.py,sha256=iYULq9vIzu8M1fSqm_bW5TkMm92w9JDB43yGxpC93xU,9862
oncoref/expression_source_adapters.py,sha256=Q7tZa65Q9-zfXbxVD5yssSd87-cWrUNh_KNL1ZPu2NM,56189
oncoref/fusions.py,sha256=6aYTeu5dol0wroyZfFoavos40XPsC4YDDKv1DWD-qlY,8056
oncoref/gene_families.py,sha256=MYvpYtaL_H2ZEPdBXhYyzqqbDNy-0dyBZTzK0ptyvXY,18648
oncoref/gene_ids.py,sha256=EiYQRBXZYvJSdj8HFTmd-VR0ddTj7G5nz711fdyj50M,20946
oncoref/gene_qc.py,sha256=Po-V1-GI7dqkR_FWkzZd9en4rxU1CxCU_i5hTvKMeOM,11065
oncoref/genome.py,sha256=DQN6mVb63HU8TeY9Mjdp1KSBqPWDIcYS5rokxmYdnLg,11508
oncoref/hpa.py,sha256=gbjxtu8z0KvZ_lQzI4_tqDwDzX4WvZpYItMhV2MEdiY,4703
oncoref/ici.py,sha256=dmEAUly1wMwn-ColIN-LQ40ZBI9ZrF2qfGw7mHlBXQ4,35089
oncoref/ici_response.py,sha256=VDwwAjYps5j10ZbCey3OMD2HhnJeDUskQHB27w3ZkZ0,6174
oncoref/incidence.py,sha256=uVWPY78jw5UcnWKuHeVsczc_VMAZj0a8D_kPETfV_oI,7636
oncoref/load_dataset.py,sha256=6rL7m1xfXQmM6Rl0St3eCXNyZ8U4Au2IEv1S-6FTH60,11495
oncoref/normalization.py,sha256=PF5wvmPDjrMjZuf66DF7mgXa9kyYVAjDb2Z4lSG12Bc,42320
oncoref/peptides.py,sha256=HbwqD0eHr4hg-9yi-O3p0NYT69VpOgF8iYDA0J6amWw,10332
oncoref/plots.py,sha256=onYKLcSmWrt5G0zb9_iMwcrfCqfbocswRPRUn8wXOyE,59332
oncoref/proteoforms.py,sha256=dmt3R53XBIATk7E5tQDhdnq0MWpPlOldNWdfL4mjA5k,16146
oncoref/reference_data.py,sha256=mRhIIpWlMQHSXcnXCHT1HmRW_Ot1NP7zfsn_lNO3vsQ,13611
oncoref/representative_partitions.py,sha256=2zROdUECRtsh4L1V0-zL3OKjJAWpELIXJ3vzMtJp_Ug,11794
oncoref/response_signatures.py,sha256=W3mSLkHf9OqZf3vjBbP_jZux0mc9lp3oUjI28Ku1sWc,3746
oncoref/samples.py,sha256=s3zrOGBlnEtThKcIYJU6nwvFLL-IjVdT75qePpoaPhM,5312
oncoref/source_matrices.py,sha256=-MPvbWUJKnDO97LxJmktRJimTBt15waBK-J28MxG5s4,16247
oncoref/tmb.py,sha256=kbLBccjtVI2QE_s2n3ycqF91g9_BlOnLj-qMNAtfIOk,11288
oncoref/tumor_references.py,sha256=lqheTH79gttYHsQkovyi1_pZD14SKTqL8qdfuFq9bQs,21936
oncoref/version.py,sha256=TXzMcaAn8HouCH1Lo-QGHl2MKytPQJrAgxcmHibLBNM,3856
oncoref/data/cancer-apd1-response.csv,sha256=o2KrlvEtUOPe70wTH9uyJzEIf6Gi2xR9Chvl3_mf3-g,16522
oncoref/data/cancer-code-burden-map.csv,sha256=bsJj1LHtNTKAQtLeQ_IRJxQyXuYzeGYGWvzUGXelJbc,115
oncoref/data/cancer-cohort-aggregates.csv,sha256=z2DZid9HWCrmIhqXXRTbP8J7HPxox4uvGXBtJJS5c64,2643
oncoref/data/cancer-driver-genes.csv,sha256=2_t22QbiGNqy2U6Q3VH420HbzPbILaETEbqkGOpzj98,50213
oncoref/data/cancer-driver-variants.csv,sha256=1Wg4WyIfDij2GeM1i0LOx0SbbUNCN1Ft-HG3-OntRUk,26938
oncoref/data/cancer-entity-driver-spectrum.csv,sha256=s2oep3Vx01QqHGfLnBPwl9eD3KvV3ZBvzT0qcw-s_K8,2443
oncoref/data/cancer-expression-source-candidates.csv,sha256=DvX-NDOH5gBXGefOJ1GT43dGcYg_D2zbJnCgUS023o8,42109
oncoref/data/cancer-frameshift-burden.csv,sha256=JCBORXn3_cox-yXS3y8zdot6uCX4DO53zjRCwDrYlUQ,3345
oncoref/data/cancer-fusion-citation-audit.csv,sha256=Mz4kaPtKXLW69IJIcwUM07_JKDpVhUn5Hd2cNQ2U7jo,28181
oncoref/data/cancer-fusions.csv,sha256=wcLMS3L-NO3D8wukoE0tOOhV9n2Qush5-0HxfgFC_eI,30289
oncoref/data/cancer-ici-response-estimates.csv,sha256=PGPfwOgnZYgK9jq9NGldED5MnmndSEH1JAzcR1zEtuA,352167
oncoref/data/cancer-ici-response.csv,sha256=WobxuTeQ6BsDAk3ZU1XgdNLAb39LzrZU88oovqMS71A,20389
oncoref/data/cancer-ici-source-locator-audit.csv,sha256=8mhPnuGDozkOf51ynRX0-otqRzwTwSB3bIq7oxopxz4,149777
oncoref/data/cancer-incidence-mortality.csv,sha256=qkQykq7vPqet2KsHiHmEnETDqUG96EigzNQj5iRcwHM,9091
oncoref/data/cancer-key-gene-citation-audit.csv,sha256=ZOm5twoKJ9sGBBfAKIBCazxLxYXewdtMctJ0O8iCGvY,142730
oncoref/data/cancer-key-genes.csv,sha256=klR_swgFjUfkBHGlhpg4n4triD7DqnOzj6waeAZDVVI,124191
oncoref/data/cancer-lineage-group-overrides.csv,sha256=nGgAub8fZZcsklUsNKl99IzAD20m8XMOodrx_cAzqSc,140
oncoref/data/cancer-lineage-groups.csv,sha256=I0R9HJzTbb02-FaZwMg34ffr3pTx5AvwaXKTTao9mpo,652
oncoref/data/cancer-mismatch-repair-statuses.csv,sha256=xHIxjZNOXvd7nb8hbd3uCW7wVZhGNyqIbOj0DJxVZzA,2956
oncoref/data/cancer-normal-tissue-map.csv,sha256=glM8zUtS4Ghz4Wx5N-lbwpaKnhrNuRrFilZK0beCkzU,7102
oncoref/data/cancer-reference-expression-availability.csv,sha256=MA37XyGikVqxYHjDxNjSjPCps20o0DdPNEmSatwUpbY,122111
oncoref/data/cancer-reference-expression-samples.csv.gz,sha256=F8d3qbBjc2VvlqOTpnK2wPzCQExMZ2sc2bt5qMwd2wQ,254904
oncoref/data/cancer-reference-sample-molecular-provenance.csv,sha256=cxNnvLiL6vNVobxWRSBz3wyBNzuETtRTdOnlIq7C3vc,12487
oncoref/data/cancer-response-signatures.csv,sha256=hgO0rHzxTwP2_DQKsZXHdP7wim5eGGc1RIQtcgTGDq0,2751
oncoref/data/cancer-subtype-groupings.csv,sha256=rox-7J7JQ9t6ujXeNWY29BkJlJjhGiPfPskbclDqn2o,1335
oncoref/data/cancer-testis-antigens.csv,sha256=I32c5UWs_J4IQvvzVGdTJIJY_TMqgbtz0NYfCiDxcpQ,136674
oncoref/data/cancer-tmb.csv,sha256=FaYAiy96frsvT5zoonIyomIl_zBBF1k8JlOe-eKCQzY,13073
oncoref/data/cancer-type-genes.csv,sha256=PcCvERtiePZZXJ3REvzjQ1u3zEmCjdnDsFSjerrVKvo,19861
oncoref/data/cancer-type-registry.csv,sha256=gTY5Kn1oQX6FBQclH0WNkrsD3AjR3wVPnaRAippfFKY,61041
oncoref/data/cancer-viral-antigens.csv,sha256=DpefwtzkbxqyxwRwzSoUPJc8aZEI6a6VSYMEgQz7wco,1348
oncoref/data/cancer-who-soft-tissue-bone-audit.csv,sha256=MtcEV5RAJA7NOuU3Dt_hzmNLwUXKQxCXsQ2hV46ZEZI,23567
oncoref/data/canonical-gene-space.csv.gz,sha256=HrGeN-DcGiSlcJa779ZcDPaaFZmlYz_1Fo2rp2rxdv8,489932
oncoref/data/cdna-identical-gene-groups.csv,sha256=bs4IfFoafW50vXfrX_Vr6-ISjwGU6Jp74LKmqHUKAqw,16901
oncoref/data/censored-gene-reference-tpm.csv,sha256=y7AqZVSIDfDvuiT2g_bL3jm8vzeYjmDFqHM2O7gh6zg,82411
oncoref/data/clean-tpm-biological-housekeeping-genes.csv,sha256=pLeI5fJadvhhKNVPjO-MTV2PqLk_IUjb71dUZeylnnA,5172
oncoref/data/clean-tpm-censored-genes.csv,sha256=rp7N_hc1so0rgjOc6fFZQYsU0DG1yf1ptbsNiKGubes,969202
oncoref/data/cohort-registry.csv,sha256=WJ25oQOpsm71y9FkcvDak5Aa0U2R53ugbCKlyb8iMgg,12809
oncoref/data/cta-candidate-references.csv,sha256=cLg1-ZuCzS8a2XYX2MNqvknYrIwCHBInjBeh0MDYhEI,2425
oncoref/data/cta-clinical-targets.csv,sha256=PhAajgcI6wI9xcDB7lfUT1PV__z3c904RIeZ9vS79ds,2082
oncoref/data/cta-ihc-unreliable.csv,sha256=V-wOwmTGju2bfTwiCQ6d8lKlP-1YUP55yvW8Fgeg7LI,708
oncoref/data/cta-specificity-audit.csv,sha256=-ZNFACTBpj-nfqgX3eQqzLzIAop-5hBoST04otpAXJ8,2529
oncoref/data/degenerate-subtype-pairs.csv,sha256=MNRZWhOIOYGT2Ny11WuTFlnCnax5-OOF8cGGWGEFO3s,4042
oncoref/data/disease-state-rules.csv,sha256=eyj47qZZ0-590Kw_dlu2bT1k3SlNephqGHORHhsZsXQ,1984
oncoref/data/ensembl-id-aliases.csv,sha256=-yEATXJAijuygzNKYvyd4u0zRe3ZF-sW7QfTWW01PfQ,361972
oncoref/data/expression-artifact-gene-universe-deltas.csv,sha256=G3y7C35ZQjVw0NBsU__fu0QljMkcUeFgzfgDj826_JE,328054
oncoref/data/expression_sources.yaml,sha256=qt2jo4WswiSfxvQMip5Gnofq8s4zXoE0QxoHwCtysvg,85041
oncoref/data/extra-tx-mappings.csv,sha256=vhfaBfjySOc_4BM4TR4rvZa4Kmryfe89IJ8ft_RfGj4,7392
oncoref/data/family-burden-map.csv,sha256=wQCeLNYgawJSAq11qj12IJvTUuHoBgedPA_Tplc_hXo,247
oncoref/data/fusion-expression-effects.csv,sha256=qpXCIPAWiWy1_JcNwAGG8ZWmFL1GJ80XxiO6gIdvnvA,2664
oncoref/data/fusion-surrogate-expression.csv,sha256=DEx-Gpv7I6MGo5ZTBnxjnD5xB256F5bHuTNrveNLUAU,6509
oncoref/data/gse294016-sample-diagnoses.csv,sha256=wV6ROFRfWEZbz8OrT01rukLpcHq_sLqFpvlpBIL8FDM,1904
oncoref/data/hemoglobin-genes.csv,sha256=FczCT5XDaurU4hXOxeRtPTwjHZ_-mA0mblGQwLCsw4w,273
oncoref/data/histone-genes.csv,sha256=bbtQbnCBopG-xSIlt8sxj326WGdjxClDRut530LT-sY,4645
oncoref/data/housekeeping-genes.csv,sha256=jIWP3Xk5dURaPmXeGar00jG-Q7IYGFLFWOOJQdgZ9Ps,3294
oncoref/data/mitochondrial-genes.csv,sha256=l_DyxUK_y0pFuVbZDt7wr9s4S4t0TI12NP9NE7AytSU,1181
oncoref/data/narrative-gene-sets.csv,sha256=RR9zWmAHDkTEs6YeKDLyjFfsmENoqBd4Ebq7Nh19MtQ,325
oncoref/data/ncbi-entrez-gene-mappings.csv.gz,sha256=w9zxvhKAQu11jsSHNq703z6UI6M1w80w6xJkI8betRQ,929996
oncoref/data/ncbi-symbol-synonyms.csv.gz,sha256=Ipa5du154eyH00FVj_fsbgJwyDEI6pYSey029cyAP40,380026
oncoref/data/nuclear-retained-lncrnas.csv,sha256=zsNEBi4jFU50YSpaPY6YVbOf4dRSraonKaoKsNxhEVE,114
oncoref/data/numt-pseudogenes.csv,sha256=EaDxf-mSkGyk3QA7aciKQGnEQGHZQXAwdRkrcQCSXXs,10267
oncoref/data/proteoform-collapse-overrides.csv,sha256=2U2b_XXA2DdQiA2or04bMuLm0N5kfd5fL2_hdY0oRw8,281
oncoref/data/proteoform-groups-genome.csv,sha256=s69DOELJE1PR1SgojSXkwv8IKMqIMmV5H54P-6tfm3w,22526
oncoref/data/proteoform-groups.csv,sha256=badsup-vwTqdcHm0oeBdMWv5ErOZ_zrOwmIzgVjMhf4,3019
oncoref/data/rare-cancer-fusion-rules.csv,sha256=x_SuR0KX0qBWQ7-yjVXUr8vvURj1wP99FaMFHpYE3SY,9826
oncoref/data/representative-source-adjudications.csv,sha256=Jtj03Ho2uy8IuYWJzS7E9GRC5f6MhkuzFwyCn9aNUMc,482
oncoref/data/ribosomal-protein-genes.csv,sha256=_gGSCorJJ88Zuj0KT7IO4y7GEoSwpXgLKl_nXTmqMdk,2742
oncoref/data/ribosomal-protein-pseudogenes.csv,sha256=nOX7-tAop4ERIzSgNXOshSjJJ041IFdfc7b0vqxLpLs,40765
oncoref/data/rrna-and-pseudogenes.csv,sha256=jWpKki1ooTKwx76NTSym-k5BsULNu-06VrmH9-UikHo,14368
oncoref/data/small-noncoding-rnas.csv,sha256=DOZ2SW4QjlACRRjUlueaBQvkiZuMxIUSPQb2-0eoJps,156824
oncoref/data/source-matrices.csv,sha256=-ATfcl4_i02FQaojBWTXxdflX1WQ6QCSrsT-NKlJcow,5286
oncoref/data/tissue-burden-map.csv,sha256=nM-mgMuSJOWUde_fcstLuv_TTc-UgnMBye7rPrcwQxE,2602
oncoref-1.8.176.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
oncoref-1.8.176.dist-info/METADATA,sha256=6N3pZD5kS4lIWNOzfeo55OxQABA2Je9pjDNYVWT90H4,8793
oncoref-1.8.176.dist-info/WHEEL,sha256=YVMoNqKzERt-wjUZwJ33xBGAwnFl-4cqbYkTtWa4itE,91
oncoref-1.8.176.dist-info/entry_points.txt,sha256=Vy_XXx4Vfrhe2Z1cxfzhqUcvny5aKf748enJ8Xf6jOM,45
oncoref-1.8.176.dist-info/top_level.txt,sha256=CTynKSTtPo2dP3a17p8m0CcLWADOPTCMVGsdAl_Cv-Q,8
oncoref-1.8.176.dist-info/RECORD,,
