README.md
pyproject.toml
src/engin_pathway/__init__.py
src/engin_pathway/cli.py
src/engin_pathway/embed.py
src/engin_pathway/enzyme.py
src/engin_pathway/handoff.py
src/engin_pathway/rank.py
src/engin_pathway/rhea.py
src/engin_pathway/schema.py
src/engin_pathway/simulate.py
src/engin_pathway/thermo.py
src/engin_pathway/thermo_bridge.py
src/engin_pathway.egg-info/PKG-INFO
src/engin_pathway.egg-info/SOURCES.txt
src/engin_pathway.egg-info/dependency_links.txt
src/engin_pathway.egg-info/entry_points.txt
src/engin_pathway.egg-info/requires.txt
src/engin_pathway.egg-info/top_level.txt
tests/test_cli.py
tests/test_embed.py
tests/test_enzyme.py
tests/test_handoff.py
tests/test_rank.py
tests/test_rhea.py
tests/test_simulate.py
tests/test_step_provenance.py
tests/test_thermo.py
tests/test_thermo_bridge.py