# test scripts
examples/autotest.py
.idea
temp_outputs
.ruff_cache
*built_with*

#vscode files
/.idea

# data
examples/data/tcia_n*
scratch.ipynb
tests/temp*

# macOS
.DS_Store

__pycache__
.pytest_cache
*.egg-info
*.csv
*.json

# Created by https://www.gitignore.io/api/emacs,python,jupyternotebooks
# Edit at https://www.gitignore.io/?templates=emacs,python,jupyternotebooks

### Emacs ###
# -*- mode: gitignore; -*-
*~
\#*\#
/.emacs.desktop
/.emacs.desktop.lock
*.elc
auto-save-list
tramp
.\#*

# Org-mode
.org-id-locations
*_archive

# flymake-mode
*_flymake.*

# eshell files
/eshell/history
/eshell/lastdir

# elpa packages
/elpa/

# reftex files
*.rel

# AUCTeX auto folder
/auto/

# cask packages
.cask/
dist/

# Flycheck
flycheck_*.el

# server auth directory
/server/

# projectiles files
.projectile

# directory configuration
.dir-locals.el

# network security
/network-security.data


### JupyterNotebooks ###
# gitignore template for Jupyter Notebooks
# website: http://jupyter.org/

.ipynb_checkpoints
*/.ipynb_checkpoints/*

# IPython
profile_default/
ipython_config.py

# Remove previous ipynb_checkpoints
#   git rm -r .ipynb_checkpoints/

### Python ###
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# End of https://www.gitignore.io/api/emacs,python,jupyternotebooks

imgtools/image.py
tests/output
examples/*output/

#Some mroe files
examples/doses
examples/images
examples/pet
examples/temp_folder
examples/process_all.py
examples/process_one.py

.vscode

tests/temp_folder*
examples/data_test
data/**

# pixi environments
.pixi

.imgtools/**/*.log

*.dcm

**/*.db

**/*.sqlite
**/*.db

test_data

notebooks
.imgtools

*.html
sandbox/*