.gitignore
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README.md
changelog.md
pyproject.toml
pyrightconfig.json
requirements.txt
.github/workflows/publish-pypi.yml
.github/workflows/tests.yml
docs/tutorial.md
docs/tutorial.org
examples/velde_et_al_2016/00readme.md
examples/velde_et_al_2016/fes_reactions.py
examples/velde_et_al_2016/kinetic_constants_fast.py
examples/velde_et_al_2016/kinetic_constants_slow.py
examples/velde_et_al_2016/plot_layout.py
examples/velde_et_al_2016/run_velde_fast.py
examples/velde_et_al_2016/run_velde_slow.py
examples/velde_et_al_2016/species.py
src/.vscode/settings.json
src/mantis/__init__.py
src/mantis/_version.py
src/mantis/diff_lib.py
src/mantis/generate_equation_system.py
src/mantis/live_plot_lib.py
src/mantis/model.py
src/mantis/monitor_plots.py
src/mantis/monolithic_solver.py
src/mantis/parallel_video.py
src/mantis/plot_data_new.py
src/mantis/solvers_numba.py
src/mantis_rtm.egg-info/PKG-INFO
src/mantis_rtm.egg-info/SOURCES.txt
src/mantis_rtm.egg-info/dependency_links.txt
src/mantis_rtm.egg-info/entry_points.txt
src/mantis_rtm.egg-info/requires.txt
src/mantis_rtm.egg-info/scm_file_list.json
src/mantis_rtm.egg-info/scm_version.json
src/mantis_rtm.egg-info/top_level.txt
tests/test_diagenetic_model.py
tests/test_direct_solver_numpy.py
tests/test_equivalence.py
tests/test_fes_flux_limited.py
tests/test_fes_predictor_corrector.py
tests/test_fes_smooth_transition.py
tests/test_fes_symmetrical_picard.py
tests/test_generate_equation_system.py
tests/test_log_compression.py
tests/test_monod_linearization.py
tests/test_parallel_video.py
tests/test_plot_data_options.py
tests/test_reactant_coexistence.py
tests/test_s0_disproportionation.py
tests/test_solvers_numba.py
tests/test_video_queue_and_logging.py