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particle/2-methylpropane.txt
particle/README.rst
particle/atom.txt
particle/atom2d.txt
particle/atom_new.txt
particle/chain10.txt
particle/chain10_3types.txt
particle/co2.txt
particle/co2_epm2.txt
particle/co2_epm2_rigid.txt
particle/dimer.txt
particle/dimer_mie_CO2.txt
particle/dimer_mie_N2.txt
particle/ethane.txt
particle/ethene.txt
particle/euler.txt
particle/hard_circle.txt
particle/hard_sphere.txt
particle/lj.txt
particle/lj_new.txt
particle/mie.txt
particle/mie_C1H4_methane.txt
particle/mie_C2H6_ethane.txt
particle/n-butane.txt
particle/n-decane.txt
particle/n-hexane.txt
particle/n-octane.txt
particle/n-pentane.txt
particle/n2.txt
particle/o2.txt
particle/propane.txt
particle/spce.txt
particle/spce_new.txt
particle/tetramer.txt
particle/trimer.txt
particle/trimer_0.4L.txt
particle/mixing/mie_model_parameters.txt
particle/tools/eV_to_kj_per_mol.py
particle/tools/f3c_A_B_to_eps_sig.py
particle/tools/kelvin_to_kj_per_mol.py
particle/tools/n-octane.psf.py
plugin/actions/include/energy_grid.h
plugin/actions/include/opt_potential.h
plugin/actions/include/record.h
plugin/actions/include/ref_potential.h
plugin/actions/include/remove.h
plugin/actions/include/remove_analyze.h
plugin/actions/include/remove_modify.h
plugin/actions/include/remove_trial.h
plugin/actions/include/run.h
plugin/actions/include/write_checkpoint.h
plugin/actions/include/write_model_params.h
plugin/actions/include/write_stepper.h
plugin/actions/src/energy_grid.cpp
plugin/actions/src/opt_potential.cpp
plugin/actions/src/record.cpp
plugin/actions/src/ref_potential.cpp
plugin/actions/src/remove.cpp
plugin/actions/src/remove_analyze.cpp
plugin/actions/src/remove_modify.cpp
plugin/actions/src/remove_trial.cpp
plugin/actions/src/run.cpp
plugin/actions/src/write_checkpoint.cpp
plugin/actions/src/write_model_params.cpp
plugin/actions/src/write_stepper.cpp
plugin/aniso/b2hs/moveori.sh
plugin/aniso/b2hs/run.sh
plugin/aniso/include/anisotropic.h
plugin/aniso/include/backmap.h
plugin/aniso/include/build_recursive_table.h
plugin/aniso/include/model_recursive_table.h
plugin/aniso/include/recursive_table.h
plugin/aniso/include/rotator.h
plugin/aniso/include/tabulate_two_rigid_body_3D.h
plugin/aniso/include/visit_model_inner_nn.h
plugin/aniso/include/visit_model_inner_table.h
plugin/aniso/particle/aniso_l10_2d.txt
plugin/aniso/particle/aniso_l10_2d_patch.txt
plugin/aniso/particle/aniso_l10_2d_patch2.txt
plugin/aniso/particle/aniso_l10_patch.txt
plugin/aniso/particle/aniso_l3_2d.txt
plugin/aniso/particle/aniso_l5_2d.txt
plugin/aniso/particle/aniso_l7_2d.txt
plugin/aniso/particle/aniso_onepatch2d.txt
plugin/aniso/particle/aniso_tabular.txt
plugin/aniso/particle/aniso_tabular2d.txt
plugin/aniso/particle/aniso_tabular2d3l.txt
plugin/aniso/particle/aniso_tabular2d_2.txt
plugin/aniso/particle/aniso_tabular2dl.txt
plugin/aniso/particle/aniso_tabularl.txt
plugin/aniso/particle/aniso_trimer.txt
plugin/aniso/src/anisotropic.cpp
plugin/aniso/src/backmap.cpp
plugin/aniso/src/build_recursive_table.cpp
plugin/aniso/src/model_recursive_table.cpp
plugin/aniso/src/recursive_table.cpp
plugin/aniso/src/rotator.cpp
plugin/aniso/src/tabulate_two_rigid_body_3D.cpp
plugin/aniso/src/visit_model_inner_nn.cpp
plugin/aniso/src/visit_model_inner_table.cpp
plugin/beta_expanded/include/compute_beta.h
plugin/beta_expanded/include/macrostate_beta.h
plugin/beta_expanded/include/perturb_beta.h
plugin/beta_expanded/include/select_nothing.h
plugin/beta_expanded/include/trial_beta.h
plugin/beta_expanded/src/compute_beta.cpp
plugin/beta_expanded/src/macrostate_beta.cpp
plugin/beta_expanded/src/perturb_beta.cpp
plugin/beta_expanded/src/select_nothing.cpp
plugin/beta_expanded/src/trial_beta.cpp
plugin/chain/include/analyze_bonds.h
plugin/chain/include/end_to_end_distance.h
plugin/chain/include/ghost_trial_grow.h
plugin/chain/include/perturb_branch.h
plugin/chain/include/perturb_connector.h
plugin/chain/include/perturb_crankshaft.h
plugin/chain/include/perturb_crankshaft_small.h
plugin/chain/include/perturb_distance_angle_connector.h
plugin/chain/include/perturb_library.h
plugin/chain/include/perturb_particle_pivot.h
plugin/chain/include/perturb_pivot.h
plugin/chain/include/perturb_position_swap.h
plugin/chain/include/perturb_reptate.h
plugin/chain/include/perturb_site_type.h
plugin/chain/include/perturb_to_anchor.h
plugin/chain/include/radius_of_gyration.h
plugin/chain/include/select_branch.h
plugin/chain/include/select_crankshaft_small.h
plugin/chain/include/select_end_segment.h
plugin/chain/include/select_particle_pivot.h
plugin/chain/include/select_perturbed.h
plugin/chain/include/select_reptate.h
plugin/chain/include/select_segment.h
plugin/chain/include/select_site_of_type.h
plugin/chain/include/select_two_sites.h
plugin/chain/include/trial_crankshaft.h
plugin/chain/include/trial_crankshaft_small.h
plugin/chain/include/trial_grow.h
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plugin/chain/include/trial_particle_pivot.h
plugin/chain/include/trial_pivot.h
plugin/chain/include/trial_reptate.h
plugin/chain/include/trial_reptate_unopt.h
plugin/chain/include/trial_swap_sites.h
plugin/chain/particle/cg4_mab.txt
plugin/chain/particle/cg4_mab_flex.txt
plugin/chain/particle/cg7mab2.txt
plugin/chain/particle/cg7mab2closed.txt
plugin/chain/particle/cg7mab2extended.txt
plugin/chain/particle/cg7mab2flex.txt
plugin/chain/particle/cg7mab2fullangflex.txt
plugin/chain/particle/chain20.txt
plugin/chain/particle/chain3.txt
plugin/chain/particle/chain5.txt
plugin/chain/particle/heterotrimer2d.txt
plugin/chain/src/analyze_bonds.cpp
plugin/chain/src/end_to_end_distance.cpp
plugin/chain/src/ghost_trial_grow.cpp
plugin/chain/src/perturb_branch.cpp
plugin/chain/src/perturb_connector.cpp
plugin/chain/src/perturb_crankshaft.cpp
plugin/chain/src/perturb_crankshaft_small.cpp
plugin/chain/src/perturb_distance_angle_connector.cpp
plugin/chain/src/perturb_library.cpp
plugin/chain/src/perturb_particle_pivot.cpp
plugin/chain/src/perturb_pivot.cpp
plugin/chain/src/perturb_position_swap.cpp
plugin/chain/src/perturb_reptate.cpp
plugin/chain/src/perturb_site_type.cpp
plugin/chain/src/perturb_to_anchor.cpp
plugin/chain/src/radius_of_gyration.cpp
plugin/chain/src/select_branch.cpp
plugin/chain/src/select_crankshaft_small.cpp
plugin/chain/src/select_end_segment.cpp
plugin/chain/src/select_particle_pivot.cpp
plugin/chain/src/select_perturbed.cpp
plugin/chain/src/select_reptate.cpp
plugin/chain/src/select_segment.cpp
plugin/chain/src/select_site_of_type.cpp
plugin/chain/src/select_two_sites.cpp
plugin/chain/src/trial_crankshaft.cpp
plugin/chain/src/trial_crankshaft_small.cpp
plugin/chain/src/trial_grow.cpp
plugin/chain/src/trial_grow_linear.cpp
plugin/chain/src/trial_particle_pivot.cpp
plugin/chain/src/trial_pivot.cpp
plugin/chain/src/trial_reptate.cpp
plugin/chain/src/trial_reptate_unopt.cpp
plugin/chain/src/trial_swap_sites.cpp
plugin/charge/include/charge_screened.h
plugin/charge/include/charge_screened_intra.h
plugin/charge/include/charge_self.h
plugin/charge/include/check_net_charge.h
plugin/charge/include/compute_add_multiple.h
plugin/charge/include/compute_remove_multiple.h
plugin/charge/include/coulomb.h
plugin/charge/include/debye_huckel.h
plugin/charge/include/electric_field.h
plugin/charge/include/ewald.h
plugin/charge/include/slab_correction.h
plugin/charge/include/trial_add_multiple.h
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plugin/charge/include/trial_transfer_multiple.h
plugin/charge/include/utils.h
plugin/charge/particle/f3c.txt
plugin/charge/particle/rpm_minus.txt
plugin/charge/particle/rpm_minus_new.txt
plugin/charge/particle/rpm_plus.txt
plugin/charge/particle/rpm_plus_new.txt
plugin/charge/particle/tip4p.txt
plugin/charge/src/charge_screened.cpp
plugin/charge/src/charge_screened_intra.cpp
plugin/charge/src/charge_self.cpp
plugin/charge/src/check_net_charge.cpp
plugin/charge/src/compute_add_multiple.cpp
plugin/charge/src/compute_remove_multiple.cpp
plugin/charge/src/coulomb.cpp
plugin/charge/src/debye_huckel.cpp
plugin/charge/src/electric_field.cpp
plugin/charge/src/ewald.cpp
plugin/charge/src/slab_correction.cpp
plugin/charge/src/trial_add_multiple.cpp
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plugin/charge/src/trial_transfer_multiple.cpp
plugin/charge/src/utils.cpp
plugin/cluster/include/analyze_cluster.h
plugin/cluster/include/calculate_cluster.h
plugin/cluster/include/compute_add_avb.h
plugin/cluster/include/compute_add_avb_divalent.h
plugin/cluster/include/compute_avb2.h
plugin/cluster/include/compute_avb4.h
plugin/cluster/include/compute_gca.h
plugin/cluster/include/compute_move_cluster.h
plugin/cluster/include/compute_remove_avb.h
plugin/cluster/include/compute_remove_avb_divalent.h
plugin/cluster/include/energy_map_all.h
plugin/cluster/include/energy_map_all_criteria.h
plugin/cluster/include/energy_map_neighbor.h
plugin/cluster/include/energy_map_neighbor_criteria.h
plugin/cluster/include/perturb_add_avb.h
plugin/cluster/include/perturb_move_avb.h
plugin/cluster/include/perturb_point_reflect.h
plugin/cluster/include/perturb_rotate_com.h
plugin/cluster/include/select_cluster.h
plugin/cluster/include/select_particle_avb.h
plugin/cluster/include/select_particle_avb_divalent.h
plugin/cluster/include/trial_add_avb.h
plugin/cluster/include/trial_add_avb_divalent.h
plugin/cluster/include/trial_avb2.h
plugin/cluster/include/trial_avb4.h
plugin/cluster/include/trial_remove_avb.h
plugin/cluster/include/trial_remove_avb_divalent.h
plugin/cluster/include/trial_rigid_cluster.h
plugin/cluster/include/trial_rotate_cluster.h
plugin/cluster/include/trial_transfer_avb.h
plugin/cluster/include/trial_transfer_avb_divalent.h
plugin/cluster/include/trial_translate_cluster.h
plugin/cluster/src/analyze_cluster.cpp
plugin/cluster/src/calculate_cluster.cpp
plugin/cluster/src/compute_add_avb.cpp
plugin/cluster/src/compute_add_avb_divalent.cpp
plugin/cluster/src/compute_avb2.cpp
plugin/cluster/src/compute_avb4.cpp
plugin/cluster/src/compute_gca.cpp
plugin/cluster/src/compute_move_cluster.cpp
plugin/cluster/src/compute_remove_avb.cpp
plugin/cluster/src/compute_remove_avb_divalent.cpp
plugin/cluster/src/energy_map_all.cpp
plugin/cluster/src/energy_map_all_criteria.cpp
plugin/cluster/src/energy_map_neighbor.cpp
plugin/cluster/src/energy_map_neighbor_criteria.cpp
plugin/cluster/src/perturb_add_avb.cpp
plugin/cluster/src/perturb_move_avb.cpp
plugin/cluster/src/perturb_point_reflect.cpp
plugin/cluster/src/perturb_rotate_com.cpp
plugin/cluster/src/select_cluster.cpp
plugin/cluster/src/select_particle_avb.cpp
plugin/cluster/src/select_particle_avb_divalent.cpp
plugin/cluster/src/trial_add_avb.cpp
plugin/cluster/src/trial_add_avb_divalent.cpp
plugin/cluster/src/trial_avb2.cpp
plugin/cluster/src/trial_avb4.cpp
plugin/cluster/src/trial_remove_avb.cpp
plugin/cluster/src/trial_remove_avb_divalent.cpp
plugin/cluster/src/trial_rigid_cluster.cpp
plugin/cluster/src/trial_rotate_cluster.cpp
plugin/cluster/src/trial_transfer_avb.cpp
plugin/cluster/src/trial_transfer_avb_divalent.cpp
plugin/cluster/src/trial_translate_cluster.cpp
plugin/configuration/include/bond.h
plugin/configuration/include/configuration.h
plugin/configuration/include/domain.h
plugin/configuration/include/file_particle.h
plugin/configuration/include/file_vmd.h
plugin/configuration/include/file_xyz.h
plugin/configuration/include/group.h
plugin/configuration/include/model_param.h
plugin/configuration/include/model_params.h
plugin/configuration/include/neighbor_criteria.h
plugin/configuration/include/particle.h
plugin/configuration/include/particle_factory.h
plugin/configuration/include/physical_constants.h
plugin/configuration/include/properties.h
plugin/configuration/include/select.h
plugin/configuration/include/site.h
plugin/configuration/include/visit_configuration.h
plugin/configuration/include/visit_particles.h
plugin/configuration/src/bond.cpp
plugin/configuration/src/configuration.cpp
plugin/configuration/src/domain.cpp
plugin/configuration/src/file_particle.cpp
plugin/configuration/src/file_vmd.cpp
plugin/configuration/src/file_xyz.cpp
plugin/configuration/src/group.cpp
plugin/configuration/src/model_param.cpp
plugin/configuration/src/model_params.cpp
plugin/configuration/src/neighbor_criteria.cpp
plugin/configuration/src/particle.cpp
plugin/configuration/src/particle_factory.cpp
plugin/configuration/src/physical_constants.cpp
plugin/configuration/src/properties.cpp
plugin/configuration/src/select.cpp
plugin/configuration/src/site.cpp
plugin/configuration/src/visit_configuration.cpp
plugin/configuration/src/visit_particles.cpp
plugin/confinement/include/background.h
plugin/confinement/include/henry_coefficient.h
plugin/confinement/include/model_hard_shape.h
plugin/confinement/include/model_lj_shape.h
plugin/confinement/include/model_square_well_shape.h
plugin/confinement/include/model_table_cartesian_1d.h
plugin/confinement/include/model_table_cartesian_1d_hard.h
plugin/confinement/include/model_table_cartesian_2d_integr.h
plugin/confinement/include/model_table_cartesian_3d_integr.h
plugin/confinement/include/model_table_cylindrical.h
plugin/confinement/include/model_table_spherical.h
plugin/confinement/include/trial_anywhere.h
plugin/confinement/include/zero_background.h
plugin/confinement/particle/ZIF8_rep222_PerezPellitero.txt
plugin/confinement/particle/porel4.txt
plugin/confinement/particle/slab20x20.txt
plugin/confinement/particle/slab5x5.txt
plugin/confinement/src/background.cpp
plugin/confinement/src/henry_coefficient.cpp
plugin/confinement/src/model_hard_shape.cpp
plugin/confinement/src/model_lj_shape.cpp
plugin/confinement/src/model_square_well_shape.cpp
plugin/confinement/src/model_table_cartesian_1d.cpp
plugin/confinement/src/model_table_cartesian_1d_hard.cpp
plugin/confinement/src/model_table_cartesian_2d_integr.cpp
plugin/confinement/src/model_table_cartesian_3d_integr.cpp
plugin/confinement/src/model_table_cylindrical.cpp
plugin/confinement/src/model_table_spherical.cpp
plugin/confinement/src/trial_anywhere.cpp
plugin/confinement/src/zero_background.cpp
plugin/egce/include/a_equal_b.h
plugin/egce/include/a_half_b.h
plugin/egce/src/a_equal_b.cpp
plugin/egce/src/a_half_b.cpp
plugin/example/include/action_example.h
plugin/example/include/analyze_example.h
plugin/example/include/model_example.h
plugin/example/include/model_param_example.h
plugin/example/particle/jagla.txt
plugin/example/src/action_example.cpp
plugin/example/src/analyze_example.cpp
plugin/example/src/model_example.cpp
plugin/example/src/model_param_example.cpp
plugin/feasst/include/feasst.h
plugin/feasst/src/feasst.cpp
plugin/feasst/src/restart.cpp
plugin/fftw/include/scattering_fftw.h
plugin/fftw/src/scattering_fftw.cpp
plugin/flat_histogram/include/bias.h
plugin/flat_histogram/include/clones.h
plugin/flat_histogram/include/collection_matrix.h
plugin/flat_histogram/include/collection_matrix_splice.h
plugin/flat_histogram/include/ensemble.h
plugin/flat_histogram/include/flat_histogram.h
plugin/flat_histogram/include/ln_probability.h
plugin/flat_histogram/include/macrostate.h
plugin/flat_histogram/include/macrostate_energy.h
plugin/flat_histogram/include/macrostate_num_particles.h
plugin/flat_histogram/include/macrostate_position.h
plugin/flat_histogram/include/transition_matrix.h
plugin/flat_histogram/include/transition_matrix_guess.h
plugin/flat_histogram/include/wang_landau.h
plugin/flat_histogram/include/window.h
plugin/flat_histogram/include/window_custom.h
plugin/flat_histogram/include/window_exponential.h
plugin/flat_histogram/include/wltm.h
plugin/flat_histogram/include/write_file_and_check.h
plugin/flat_histogram/src/bias.cpp
plugin/flat_histogram/src/clones.cpp
plugin/flat_histogram/src/collection_matrix.cpp
plugin/flat_histogram/src/collection_matrix_splice.cpp
plugin/flat_histogram/src/ensemble.cpp
plugin/flat_histogram/src/flat_histogram.cpp
plugin/flat_histogram/src/ln_probability.cpp
plugin/flat_histogram/src/macrostate.cpp
plugin/flat_histogram/src/macrostate_energy.cpp
plugin/flat_histogram/src/macrostate_num_particles.cpp
plugin/flat_histogram/src/macrostate_position.cpp
plugin/flat_histogram/src/transition_matrix.cpp
plugin/flat_histogram/src/transition_matrix_guess.cpp
plugin/flat_histogram/src/wang_landau.cpp
plugin/flat_histogram/src/window.cpp
plugin/flat_histogram/src/window_custom.cpp
plugin/flat_histogram/src/window_exponential.cpp
plugin/flat_histogram/src/wltm.cpp
plugin/flat_histogram/src/write_file_and_check.cpp
plugin/gibbs/include/check_constant_volume.h
plugin/gibbs/include/compute_gibbs_morph.h
plugin/gibbs/include/compute_gibbs_particle_transfer.h
plugin/gibbs/include/compute_gibbs_volume_transfer.h
plugin/gibbs/include/copy_following_lines.h
plugin/gibbs/include/copy_next_line.h
plugin/gibbs/include/end_copy.h
plugin/gibbs/include/gibbs_initialize.h
plugin/gibbs/include/perturb_particle_type.h
plugin/gibbs/include/trial_gibbs_morph.h
plugin/gibbs/include/trial_gibbs_particle_transfer.h
plugin/gibbs/include/trial_gibbs_volume_transfer.h
plugin/gibbs/src/check_constant_volume.cpp
plugin/gibbs/src/compute_gibbs_morph.cpp
plugin/gibbs/src/compute_gibbs_particle_transfer.cpp
plugin/gibbs/src/compute_gibbs_volume_transfer.cpp
plugin/gibbs/src/copy_following_lines.cpp
plugin/gibbs/src/copy_next_line.cpp
plugin/gibbs/src/end_copy.cpp
plugin/gibbs/src/gibbs_initialize.cpp
plugin/gibbs/src/perturb_particle_type.cpp
plugin/gibbs/src/trial_gibbs_morph.cpp
plugin/gibbs/src/trial_gibbs_particle_transfer.cpp
plugin/gibbs/src/trial_gibbs_volume_transfer.cpp
plugin/math/include/accumulator.h
plugin/math/include/constants.h
plugin/math/include/euler.h
plugin/math/include/formula.h
plugin/math/include/formula_exponential.h
plugin/math/include/formula_polynomial.h
plugin/math/include/golden_search.h
plugin/math/include/histogram.h
plugin/math/include/matrix.h
plugin/math/include/minimize.h
plugin/math/include/position.h
plugin/math/include/quadratic_equation.h
plugin/math/include/random.h
plugin/math/include/random_modulo.h
plugin/math/include/random_mt19937.h
plugin/math/include/recursive_table.h
plugin/math/include/solver.h
plugin/math/include/solver_bisection.h
plugin/math/include/solver_brent_dekker.h
plugin/math/include/solver_newton_raphson.h
plugin/math/include/spline.h
plugin/math/include/table.h
plugin/math/include/utils_math.h
plugin/math/src/accumulator.cpp
plugin/math/src/euler.cpp
plugin/math/src/formula.cpp
plugin/math/src/formula_exponential.cpp
plugin/math/src/formula_polynomial.cpp
plugin/math/src/golden_search.cpp
plugin/math/src/histogram.cpp
plugin/math/src/matrix.cpp
plugin/math/src/minimize.cpp
plugin/math/src/position.cpp
plugin/math/src/random.cpp
plugin/math/src/random_modulo.cpp
plugin/math/src/random_mt19937.cpp
plugin/math/src/recursive_table.cpp
plugin/math/src/solver.cpp
plugin/math/src/solver_bisection.cpp
plugin/math/src/solver_brent_dekker.cpp
plugin/math/src/solver_newton_raphson.cpp
plugin/math/src/spline.cpp
plugin/math/src/table.cpp
plugin/math/src/utils_math.cpp
plugin/mayer/include/mayer_sampling.h
plugin/mayer/src/mayer_sampling.cpp
plugin/model_expanded/include/compute_model.h
plugin/model_expanded/include/constrain_model_index.h
plugin/model_expanded/include/macrostate_model.h
plugin/model_expanded/include/model_expanded.h
plugin/model_expanded/include/perturb_model.h
plugin/model_expanded/include/trial_model.h
plugin/model_expanded/src/compute_model.cpp
plugin/model_expanded/src/constrain_model_index.cpp
plugin/model_expanded/src/macrostate_model.cpp
plugin/model_expanded/src/model_expanded.cpp
plugin/model_expanded/src/perturb_model.cpp
plugin/model_expanded/src/trial_model.cpp
plugin/models/include/angle_harmonic.h
plugin/models/include/bond_harmonic.h
plugin/models/include/dihedral_harmonic.h
plugin/models/include/dihedral_ryckaert_bellemans.h
plugin/models/include/dihedral_trappe.h
plugin/models/include/f3c.h
plugin/models/include/fene.h
plugin/models/include/jagla.h
plugin/models/include/lennard_jones_alpha.h
plugin/models/include/lennard_jones_cut_shift.h
plugin/models/include/lennard_jones_force_shift.h
plugin/models/include/mie.h
plugin/models/include/mie_parameters.h
plugin/models/include/square_well.h
plugin/models/include/table_potential.h
plugin/models/include/two_body_alpha.h
plugin/models/include/two_body_table.h
plugin/models/include/yukawa.h
plugin/models/particle/chain10.txt
plugin/models/particle/ljdelta.txt
plugin/models/particle/ljlambda.txt
plugin/models/src/angle_harmonic.cpp
plugin/models/src/bond_harmonic.cpp
plugin/models/src/dihedral_harmonic.cpp
plugin/models/src/dihedral_ryckaert_bellemans.cpp
plugin/models/src/dihedral_trappe.cpp
plugin/models/src/f3c.cpp
plugin/models/src/fene.cpp
plugin/models/src/jagla.cpp
plugin/models/src/lennard_jones_alpha.cpp
plugin/models/src/lennard_jones_cut_shift.cpp
plugin/models/src/lennard_jones_force_shift.cpp
plugin/models/src/mie.cpp
plugin/models/src/mie_parameters.cpp
plugin/models/src/square_well.cpp
plugin/models/src/table_potential.cpp
plugin/models/src/two_body_alpha.cpp
plugin/models/src/two_body_table.cpp
plugin/models/src/yukawa.cpp
plugin/monte_carlo/include/acceptance.h
plugin/monte_carlo/include/action.h
plugin/monte_carlo/include/always_reject.h
plugin/monte_carlo/include/analyze.h
plugin/monte_carlo/include/analyze_factory.h
plugin/monte_carlo/include/analyze_update_only.h
plugin/monte_carlo/include/analyze_write_only.h
plugin/monte_carlo/include/constrain_num_particles.h
plugin/monte_carlo/include/constrain_volume_by_cutoff.h
plugin/monte_carlo/include/constraint.h
plugin/monte_carlo/include/convert_to_ref_potential.h
plugin/monte_carlo/include/criteria.h
plugin/monte_carlo/include/metropolis.h
plugin/monte_carlo/include/modify.h
plugin/monte_carlo/include/modify_factory.h
plugin/monte_carlo/include/modify_update_only.h
plugin/monte_carlo/include/monte_carlo.h
plugin/monte_carlo/include/perturb.h
plugin/monte_carlo/include/perturb_add.h
plugin/monte_carlo/include/perturb_add_remove.h
plugin/monte_carlo/include/perturb_anywhere.h
plugin/monte_carlo/include/perturb_dihedral.h
plugin/monte_carlo/include/perturb_distance.h
plugin/monte_carlo/include/perturb_distance_angle.h
plugin/monte_carlo/include/perturb_move.h
plugin/monte_carlo/include/perturb_remove.h
plugin/monte_carlo/include/perturb_rotate.h
plugin/monte_carlo/include/perturb_translate.h
plugin/monte_carlo/include/perturb_volume.h
plugin/monte_carlo/include/rosenbluth.h
plugin/monte_carlo/include/stepper.h
plugin/monte_carlo/include/trial.h
plugin/monte_carlo/include/trial_add.h
plugin/monte_carlo/include/trial_add_remove.h
plugin/monte_carlo/include/trial_compute.h
plugin/monte_carlo/include/trial_compute_add.h
plugin/monte_carlo/include/trial_compute_add_remove.h
plugin/monte_carlo/include/trial_compute_move.h
plugin/monte_carlo/include/trial_compute_remove.h
plugin/monte_carlo/include/trial_compute_translate.h
plugin/monte_carlo/include/trial_compute_volume.h
plugin/monte_carlo/include/trial_factory.h
plugin/monte_carlo/include/trial_move.h
plugin/monte_carlo/include/trial_remove.h
plugin/monte_carlo/include/trial_rotate.h
plugin/monte_carlo/include/trial_select.h
plugin/monte_carlo/include/trial_select_all.h
plugin/monte_carlo/include/trial_select_angle.h
plugin/monte_carlo/include/trial_select_bond.h
plugin/monte_carlo/include/trial_select_dihedral.h
plugin/monte_carlo/include/trial_select_particle.h
plugin/monte_carlo/include/trial_stage.h
plugin/monte_carlo/include/trial_transfer.h
plugin/monte_carlo/include/trial_translate.h
plugin/monte_carlo/include/trial_volume.h
plugin/monte_carlo/include/tunable.h
plugin/monte_carlo/src/acceptance.cpp
plugin/monte_carlo/src/action.cpp
plugin/monte_carlo/src/always_reject.cpp
plugin/monte_carlo/src/analyze.cpp
plugin/monte_carlo/src/analyze_factory.cpp
plugin/monte_carlo/src/analyze_update_only.cpp
plugin/monte_carlo/src/analyze_write_only.cpp
plugin/monte_carlo/src/constrain_num_particles.cpp
plugin/monte_carlo/src/constrain_volume_by_cutoff.cpp
plugin/monte_carlo/src/constraint.cpp
plugin/monte_carlo/src/convert_to_ref_potential.cpp
plugin/monte_carlo/src/criteria.cpp
plugin/monte_carlo/src/metropolis.cpp
plugin/monte_carlo/src/modify.cpp
plugin/monte_carlo/src/modify_factory.cpp
plugin/monte_carlo/src/modify_update_only.cpp
plugin/monte_carlo/src/monte_carlo.cpp
plugin/monte_carlo/src/perturb.cpp
plugin/monte_carlo/src/perturb_add.cpp
plugin/monte_carlo/src/perturb_add_remove.cpp
plugin/monte_carlo/src/perturb_anywhere.cpp
plugin/monte_carlo/src/perturb_dihedral.cpp
plugin/monte_carlo/src/perturb_distance.cpp
plugin/monte_carlo/src/perturb_distance_angle.cpp
plugin/monte_carlo/src/perturb_move.cpp
plugin/monte_carlo/src/perturb_remove.cpp
plugin/monte_carlo/src/perturb_rotate.cpp
plugin/monte_carlo/src/perturb_translate.cpp
plugin/monte_carlo/src/perturb_volume.cpp
plugin/monte_carlo/src/rosenbluth.cpp
plugin/monte_carlo/src/stepper.cpp
plugin/monte_carlo/src/trial.cpp
plugin/monte_carlo/src/trial_add.cpp
plugin/monte_carlo/src/trial_add_remove.cpp
plugin/monte_carlo/src/trial_compute.cpp
plugin/monte_carlo/src/trial_compute_add.cpp
plugin/monte_carlo/src/trial_compute_add_remove.cpp
plugin/monte_carlo/src/trial_compute_move.cpp
plugin/monte_carlo/src/trial_compute_remove.cpp
plugin/monte_carlo/src/trial_compute_translate.cpp
plugin/monte_carlo/src/trial_compute_volume.cpp
plugin/monte_carlo/src/trial_factory.cpp
plugin/monte_carlo/src/trial_move.cpp
plugin/monte_carlo/src/trial_remove.cpp
plugin/monte_carlo/src/trial_rotate.cpp
plugin/monte_carlo/src/trial_select.cpp
plugin/monte_carlo/src/trial_select_all.cpp
plugin/monte_carlo/src/trial_select_angle.cpp
plugin/monte_carlo/src/trial_select_bond.cpp
plugin/monte_carlo/src/trial_select_dihedral.cpp
plugin/monte_carlo/src/trial_select_particle.cpp
plugin/monte_carlo/src/trial_stage.cpp
plugin/monte_carlo/src/trial_transfer.cpp
plugin/monte_carlo/src/trial_translate.cpp
plugin/monte_carlo/src/trial_volume.cpp
plugin/monte_carlo/src/tunable.cpp
plugin/morph/include/compute_morph.h
plugin/morph/include/macrostate_morph.h
plugin/morph/include/trial_morph.h
plugin/morph/include/trial_morph_expanded.h
plugin/morph/include/trial_position_swap.h
plugin/morph/particle/dimer_to_monomer.txt
plugin/morph/particle/monomer.txt
plugin/morph/particle/trimer_to_tetramer.txt
plugin/morph/src/compute_morph.cpp
plugin/morph/src/macrostate_morph.cpp
plugin/morph/src/trial_morph.cpp
plugin/morph/src/trial_morph_expanded.cpp
plugin/morph/src/trial_position_swap.cpp
plugin/mpi/include/model_mpi.h
plugin/mpi/include/mpi_place_holder.h
plugin/mpi/include/thread_mpi.h
plugin/mpi/src/model_mpi.cpp
plugin/mpi/src/mpi_place_holder.cpp
plugin/mpi/src/thread_mpi.cpp
plugin/netcdf/include/file_netcdf.h
plugin/netcdf/include/movie_netcdf.h
plugin/netcdf/src/file_netcdf.cpp
plugin/netcdf/src/movie_netcdf.cpp
plugin/opt_lj/include/visit_model_opt_lj.h
plugin/opt_lj/include/visit_model_opt_rpm.h
plugin/opt_lj/src/visit_model_opt_lj.cpp
plugin/opt_lj/src/visit_model_opt_rpm.cpp
plugin/patch/include/file_xyz_patch.h
plugin/patch/include/file_xyz_spherocylinder.h
plugin/patch/include/movie_patch.h
plugin/patch/include/movie_spherocylinder.h
plugin/patch/include/patch_angle.h
plugin/patch/include/solid_of_revolution_table.h
plugin/patch/include/spherocylinder.h
plugin/patch/include/two_particle_contact.h
plugin/patch/include/visit_model_inner_patch.h
plugin/patch/particle/janus.txt
plugin/patch/particle/one_patch.txt
plugin/patch/particle/one_patch2d.txt
plugin/patch/particle/spherocylinder.txt
plugin/patch/particle/two_patch_linear.txt
plugin/patch/src/file_xyz_patch.cpp
plugin/patch/src/file_xyz_spherocylinder.cpp
plugin/patch/src/movie_patch.cpp
plugin/patch/src/movie_spherocylinder.cpp
plugin/patch/src/patch_angle.cpp
plugin/patch/src/solid_of_revolution_table.cpp
plugin/patch/src/spherocylinder.cpp
plugin/patch/src/two_particle_contact.cpp
plugin/patch/src/visit_model_inner_patch.cpp
plugin/prefetch/include/pool.h
plugin/prefetch/include/prefetch.h
plugin/prefetch/src/pool.cpp
plugin/prefetch/src/prefetch.cpp
plugin/prefetch/tutorial/launch_6_parallel.cpp
plugin/prefetch/tutorial/msd.cpp
plugin/server/include/listen.h
plugin/server/include/model_server.h
plugin/server/include/server.h
plugin/server/include/visit_model_inner_server.h
plugin/server/src/listen.cpp
plugin/server/src/model_server.cpp
plugin/server/src/server.cpp
plugin/server/src/visit_model_inner_server.cpp
plugin/shape/include/cuboid.h
plugin/shape/include/cylinder.h
plugin/shape/include/finite_cylinder.h
plugin/shape/include/formula_sine_wave.h
plugin/shape/include/half_space.h
plugin/shape/include/half_space_sine.h
plugin/shape/include/half_space_tilted.h
plugin/shape/include/shape.h
plugin/shape/include/shape_file.h
plugin/shape/include/shape_intersect.h
plugin/shape/include/shape_union.h
plugin/shape/include/shaped_entity.h
plugin/shape/include/slab.h
plugin/shape/include/slab_sine.h
plugin/shape/include/sphere.h
plugin/shape/include/supertoroid.h
plugin/shape/src/cuboid.cpp
plugin/shape/src/cylinder.cpp
plugin/shape/src/finite_cylinder.cpp
plugin/shape/src/formula_sine_wave.cpp
plugin/shape/src/half_space.cpp
plugin/shape/src/half_space_sine.cpp
plugin/shape/src/half_space_tilted.cpp
plugin/shape/src/shape.cpp
plugin/shape/src/shape_file.cpp
plugin/shape/src/shape_intersect.cpp
plugin/shape/src/shape_union.cpp
plugin/shape/src/shaped_entity.cpp
plugin/shape/src/slab.cpp
plugin/shape/src/slab_sine.cpp
plugin/shape/src/sphere.cpp
plugin/shape/src/supertoroid.cpp
plugin/steppers/include/check.h
plugin/steppers/include/check_energy.h
plugin/steppers/include/check_physicality.h
plugin/steppers/include/check_properties.h
plugin/steppers/include/chirality_2d.h
plugin/steppers/include/cpu_time.h
plugin/steppers/include/criteria_updater.h
plugin/steppers/include/criteria_writer.h
plugin/steppers/include/density.h
plugin/steppers/include/density_profile.h
plugin/steppers/include/energy.h
plugin/steppers/include/extensive_moments.h
plugin/steppers/include/ghost_trial_volume.h
plugin/steppers/include/heat_capacity.h
plugin/steppers/include/increment_phase.h
plugin/steppers/include/log.h
plugin/steppers/include/mean_squared_displacement.h
plugin/steppers/include/movie.h
plugin/steppers/include/num_particles.h
plugin/steppers/include/pair_distribution.h
plugin/steppers/include/profile_cpu.h
plugin/steppers/include/profile_trials.h
plugin/steppers/include/read_config_from_file.h
plugin/steppers/include/scattering.h
plugin/steppers/include/seek_analyze.h
plugin/steppers/include/seek_modify.h
plugin/steppers/include/specific_energy.h
plugin/steppers/include/specific_volume.h
plugin/steppers/include/tune.h
plugin/steppers/include/volume.h
plugin/steppers/include/wall_clock_limit.h
plugin/steppers/include/wrap_particles.h
plugin/steppers/src/check.cpp
plugin/steppers/src/check_energy.cpp
plugin/steppers/src/check_physicality.cpp
plugin/steppers/src/check_properties.cpp
plugin/steppers/src/chirality_2d.cpp
plugin/steppers/src/cpu_time.cpp
plugin/steppers/src/criteria_updater.cpp
plugin/steppers/src/criteria_writer.cpp
plugin/steppers/src/density.cpp
plugin/steppers/src/density_profile.cpp
plugin/steppers/src/energy.cpp
plugin/steppers/src/extensive_moments.cpp
plugin/steppers/src/ghost_trial_volume.cpp
plugin/steppers/src/heat_capacity.cpp
plugin/steppers/src/increment_phase.cpp
plugin/steppers/src/log.cpp
plugin/steppers/src/mean_squared_displacement.cpp
plugin/steppers/src/movie.cpp
plugin/steppers/src/num_particles.cpp
plugin/steppers/src/pair_distribution.cpp
plugin/steppers/src/profile_cpu.cpp
plugin/steppers/src/profile_trials.cpp
plugin/steppers/src/read_config_from_file.cpp
plugin/steppers/src/scattering.cpp
plugin/steppers/src/seek_analyze.cpp
plugin/steppers/src/seek_modify.cpp
plugin/steppers/src/specific_energy.cpp
plugin/steppers/src/specific_volume.cpp
plugin/steppers/src/tune.cpp
plugin/steppers/src/volume.cpp
plugin/steppers/src/wall_clock_limit.cpp
plugin/steppers/src/wrap_particles.cpp
plugin/system/include/angle_square_well.h
plugin/system/include/bond_four_body.h
plugin/system/include/bond_square_well.h
plugin/system/include/bond_three_body.h
plugin/system/include/bond_two_body.h
plugin/system/include/bond_visitor.h
plugin/system/include/cells.h
plugin/system/include/cutoff_outer.h
plugin/system/include/dont_visit_model.h
plugin/system/include/energy_map.h
plugin/system/include/hard_sphere.h
plugin/system/include/ideal_gas.h
plugin/system/include/lennard_jones.h
plugin/system/include/long_range_corrections.h
plugin/system/include/model.h
plugin/system/include/model_empty.h
plugin/system/include/model_one_body.h
plugin/system/include/model_three_body.h
plugin/system/include/model_two_body.h
plugin/system/include/model_two_body_factory.h
plugin/system/include/model_two_body_table.h
plugin/system/include/potential.h
plugin/system/include/potential_factory.h
plugin/system/include/rigid_angle.h
plugin/system/include/rigid_bond.h
plugin/system/include/rigid_dihedral.h
plugin/system/include/synchronize_data.h
plugin/system/include/system.h
plugin/system/include/thermo_params.h
plugin/system/include/visit_model.h
plugin/system/include/visit_model_bond.h
plugin/system/include/visit_model_cell.h
plugin/system/include/visit_model_cutoff_outer.h
plugin/system/include/visit_model_inner.h
plugin/system/include/visit_model_intra.h
plugin/system/include/visit_model_intra_map.h
plugin/system/src/angle_square_well.cpp
plugin/system/src/bond_four_body.cpp
plugin/system/src/bond_square_well.cpp
plugin/system/src/bond_three_body.cpp
plugin/system/src/bond_two_body.cpp
plugin/system/src/bond_visitor.cpp
plugin/system/src/cells.cpp
plugin/system/src/cutoff_outer.cpp
plugin/system/src/dont_visit_model.cpp
plugin/system/src/energy_map.cpp
plugin/system/src/hard_sphere.cpp
plugin/system/src/ideal_gas.cpp
plugin/system/src/lennard_jones.cpp
plugin/system/src/long_range_corrections.cpp
plugin/system/src/model.cpp
plugin/system/src/model_empty.cpp
plugin/system/src/model_one_body.cpp
plugin/system/src/model_three_body.cpp
plugin/system/src/model_two_body.cpp
plugin/system/src/model_two_body_factory.cpp
plugin/system/src/model_two_body_table.cpp
plugin/system/src/potential.cpp
plugin/system/src/potential_factory.cpp
plugin/system/src/rigid_angle.cpp
plugin/system/src/rigid_bond.cpp
plugin/system/src/rigid_dihedral.cpp
plugin/system/src/synchronize_data.cpp
plugin/system/src/system.cpp
plugin/system/src/thermo_params.cpp
plugin/system/src/visit_model.cpp
plugin/system/src/visit_model_bond.cpp
plugin/system/src/visit_model_cell.cpp
plugin/system/src/visit_model_cutoff_outer.cpp
plugin/system/src/visit_model_inner.cpp
plugin/system/src/visit_model_intra.cpp
plugin/system/src/visit_model_intra_map.cpp
plugin/threads/include/thread.h
plugin/threads/include/thread_omp.h
plugin/threads/src/thread.cpp
plugin/threads/src/thread_omp.cpp
plugin/utils/include/argument_parse.h
plugin/utils/include/arguments.h
plugin/utils/include/arguments_extra.h
plugin/utils/include/cache.h
plugin/utils/include/checkpoint.h
plugin/utils/include/custom_exception.h
plugin/utils/include/debug.h
plugin/utils/include/definitions.h
plugin/utils/include/else.h
plugin/utils/include/end_for.h
plugin/utils/include/end_if.h
plugin/utils/include/file.h
plugin/utils/include/for.h
plugin/utils/include/if.h
plugin/utils/include/io.h
plugin/utils/include/let.h
plugin/utils/include/max_precision.h
plugin/utils/include/progress_report.h
plugin/utils/include/restart.h
plugin/utils/include/serialize.h
plugin/utils/include/serialize_extra.h
plugin/utils/include/timer.h
plugin/utils/include/timer_rdtsc.h
plugin/utils/include/utils.h
plugin/utils/src/argument_parse.cpp
plugin/utils/src/arguments.cpp
plugin/utils/src/arguments_extra.cpp
plugin/utils/src/cache.cpp
plugin/utils/src/checkpoint.cpp
plugin/utils/src/custom_exception.cpp
plugin/utils/src/debug.cpp
plugin/utils/src/file.cpp
plugin/utils/src/io.cpp
plugin/utils/src/progress_report.cpp
plugin/utils/src/serialize.cpp
plugin/utils/src/timer.cpp
plugin/utils/src/timer_rdtsc.cpp
plugin/utils/src/utils.cpp
plugin/xtc/include/file_xtc.h
plugin/xtc/src/file_xtc.cpp
src/feasst/__init__.py
src/feasst/accumulator.py
src/feasst/cd.py
src/feasst/coarse_grain_pdb.py
src/feasst/feasst.cpp
src/feasst/fstio.py
src/feasst/fstplot.py
src/feasst/macrostate_distribution.py
src/feasst/menu.py
src/feasst/multistate_accumulator.py
src/feasst/physical_constants.py
src/feasst/scattering.py
src/feasst.egg-info/PKG-INFO
src/feasst.egg-info/SOURCES.txt
src/feasst.egg-info/dependency_links.txt
src/feasst.egg-info/entry_points.txt
src/feasst.egg-info/top_level.txt
src/feasst/__pycache__/accumulator.cpython-312.pyc
src/feasst/__pycache__/cd.cpython-312.pyc
src/feasst/__pycache__/fstio.cpython-312.pyc
src/feasst/__pycache__/fstplot.cpython-312.pyc
src/feasst/__pycache__/macrostate_distribution.cpython-312.pyc
src/feasst/__pycache__/multistate_accumulator.cpython-312.pyc
src/feasst/__pycache__/physical_constants.cpython-312.pyc
src/feasst/data/menu.json