NIPY logo
Home · Quickstart · Documentation · Citation · NiPy
Loading

Table Of Contents

Versions

ReleaseDevel
0.9.01.0-dev
Download Github

Links

interfaces.c3

C3dAffineTool

Link to code

Wraps command c3d_affine_tool

Converts fsl-style Affine registration into ANTS compatible itk format

Example

>>> from nipype.interfaces.c3 import C3dAffineTool
>>> c3 = C3dAffineTool()
>>> c3.inputs.source_file = 'cmatrix.mat'
>>> c3.inputs.itk_transform = 'affine.txt'
>>> c3.inputs.fsl2ras = True
>>> c3.cmdline
'c3d_affine_tool -src cmatrix.mat -fsl2ras -oitk affine.txt'

Inputs:

[Mandatory]
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal
        immediately, `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

[Optional]
args: (a string)
        Additional parameters to the command
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
fsl2ras: (a boolean)
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
itk_transform: (a boolean or a file name)
        Export ITK transform.
reference_file: (an existing file name)
source_file: (an existing file name)
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal
        immediately, `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored
transform_file: (an existing file name)

Outputs:

itk_transform: (an existing file name)