# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
*.manifest
*.spec

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# IDEs
.idea/
.vscode/
*.swp
*.swo
*~

# OS
.DS_Store
Thumbs.db

# dsRNAscan specific
*.dsRNApredictions.bp
*_merged_results.txt
*_ein_results.txt
test_sequence.fa
*.test_chr.*
EMBOSS-6.6.0/
EMBOSS-6.6.0.tar.gz
emboss_install/

# Einverted binaries (keep only generic one)
dsrnascan/tools/einverted_*
dsrnascan/tools/acd/

# Temporary files
*.tmp
*.temp
*.log

# pypirc file
.pypirc
pypyirc.template