.gitignore
.mlc-config.json
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
README.dev.md
README.md
__CI_convert_notebook_execute_false_mkdocs_yaml.py
mkdocs.yml
pyproject.toml
sonar-project.properties
.githooks/pre-commit
.github/workflows/build.yml
.github/workflows/cffconvert.yml
.github/workflows/documentation-deploy-development.yml
.github/workflows/documentation-deploy-release.yml
.github/workflows/documentation-test.yml
.github/workflows/markdown-link-check.yml
.github/workflows/publish.yml
.github/workflows/sonarcloud.yml
docs/index.md
docs/assets/custom.css
docs/assets/fontawesome.min.js
docs/assets/icon.png
docs/assets/logo.png
docs/assets/mathjax.js
docs/assets/mibitrans_schematics_structure.svg
docs/assets/model_comparison_trans.svg
docs/assets/plume_animation.gif
docs/assets/solid.min.js
docs/background/bioscreen.md
docs/background/instantreaction.md
docs/background/massbalance.md
docs/background/modelimplementations.md
docs/background/modelsetup.md
docs/background/parameters.md
docs/background/transporttheory.md
docs/development/development.md
docs/examples/animate_plume_plots.py
docs/examples/basic_use_of_mibitrans.ipynb
docs/examples/benchmarking_BIOSCREEN.ipynb
docs/examples/example_bemidji.ipynb
docs/examples/example_keesler.ipynb
docs/examples/example_mibitrans_anatrans.ipynb
docs/implementation/exampledata.md
docs/implementation/implementation.md
docs/introduction/introduction.md
docs/reference/reference_analysis.md
docs/reference/reference_data.md
docs/reference/reference_transport.md
docs/reference/reference_visualize.md
examples/animate_plume_plots.py
examples/basic_use_of_mibitrans.ipynb
examples/benchmarking_BIOSCREEN.ipynb
examples/comparison_models_mbt_ana_bio.ipynb
examples/example_bemidji.ipynb
examples/example_keesler.ipynb
examples/example_mibitrans_anatrans.ipynb
examples/getting_started.ipynb
examples/model_sensitivities.ipynb
examples/sensitivity_source_depletion.ipynb
examples/sensitivity_transverse_approximation.ipynb
examples/sensitivity_truncation_bioscreen.ipynb
mibitrans/__init__.py
mibitrans.egg-info/PKG-INFO
mibitrans.egg-info/SOURCES.txt
mibitrans.egg-info/dependency_links.txt
mibitrans.egg-info/requires.txt
mibitrans.egg-info/top_level.txt
mibitrans/analysis/__init__.py
mibitrans/analysis/differences.py
mibitrans/analysis/mass_balance.py
mibitrans/analysis/parameter_calculations.py
mibitrans/data/__init__.py
mibitrans/data/check_input.py
mibitrans/data/example_data.json
mibitrans/data/example_data.py
mibitrans/data/parameter_information.py
mibitrans/data/parameters.py
mibitrans/transport/__init__.py
mibitrans/transport/model_parent.py
mibitrans/transport/models.py
mibitrans/visualize/__init__.py
mibitrans/visualize/animation.py
mibitrans/visualize/plot_line.py
mibitrans/visualize/plot_surface.py
mibitrans/visualize/show_conditions.py
tests/__init__.py
tests/conftest.py
tests/test_analysis.py
tests/test_anatrans.py
tests/test_bioscreen.py
tests/test_example_data.py
tests/test_mass_balance.py
tests/test_mibitrans.py
tests/test_parameters.py
tests/test_transport_3d.py
tests/test_visualization.py