LICENSE.txt
MANIFEST.in
README.md
setup.py
MetaSAG/BCFilter.py
MetaSAG/Barcode.xlsx
MetaSAG/BarcodeDeal.py
MetaSAG/BinQCAnno.py
MetaSAG/CellHGT.py
MetaSAG/DoublePlotByPavian.R
MetaSAG/HUMAnNPath.py
MetaSAG/MetaK_Lytic.py
MetaSAG/MetaPhlAnAsign.py
MetaSAG/PathClusterHeatmap.R
MetaSAG/SNPStrain.py
MetaSAG/SeuratSGB.R
MetaSAG/Tree.py
MetaSAG/UnknownSAG.py
MetaSAG/__init__.py
MetaSAG/example_Lytic.npy
MetaSAG/example_temperate_feature.npy
MetaSAG/final_model.h5
MetaSAG/k-mer.py
MetaSAG/k_mer_union.py
MetaSAG/mpa_vOct22_CHOCOPhlAnSGB_202403_species.txt
MetaSAG/phage_predictor.py
MetaSAG/strain_analysis_multi_sgb.R
MetaSAG/trimmomatic/NexteraPE-PE.fa
MetaSAG/trimmomatic/TruSeq2-PE.fa
MetaSAG/trimmomatic/TruSeq2-SE.fa
MetaSAG/trimmomatic/TruSeq3-PE-2.fa
MetaSAG/trimmomatic/TruSeq3-PE.fa
MetaSAG/trimmomatic/TruSeq3-SE.fa
MetaSAG/trimmomatic/trimmomatic-0.36.jar
READMESource/1stDerivate.png
READMESource/2ndDerivate.png
READMESource/CDF_BCReads.png
READMESource/DoubleCell.png
READMESource/Framework.png
READMESource/Framework2.png
READMESource/HGT_Tree.png
READMESource/HUMAnNPath.png
READMESource/READMEUsage1.md
READMESource/READMEUsage10.md
READMESource/READMEUsage11.md
READMESource/READMEUsage2.md
READMESource/READMEUsage3.md
READMESource/READMEUsage4.md
READMESource/READMEUsage5.md
READMESource/READMEUsage6.md
READMESource/READMEUsage7.md
READMESource/READMEUsage8.md
READMESource/READMEUsage9.md
READMESource/ReadMETool.md
READMESource/SNP_Pheatmap.png
READMESource/SNP_Tree.png
READMESource/SNP_Umap.png
READMESource/SNP_Umap_prep.png
READMESource/Seurat_Pheatmap.png
READMESource/Seurat_Umap.png
READMESource/StackCellsPicture.png
READMESource/Tree.png
metasag.egg-info/PKG-INFO
metasag.egg-info/SOURCES.txt
metasag.egg-info/dependency_links.txt
metasag.egg-info/requires.txt
metasag.egg-info/top_level.txt