Circadian Workbench
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Circadian Workbench
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Getting started
Getting started
Supported files
Choose a detrending method
Choose a normalisation method
Callers and automation
Callers and automation
Shared workflow explained
Python interface
Shared figure options
Complete action reference
Known-truth benchmark traces
Benchmark score uncertainty
Compare rhythm detections
Compare timing between rhythms
Summarise timing across samples
Filter traces without filling gaps
Analyses
Analyses
Analysis explained
Period and rhythm
Period and rhythm
Compare period estimates
Test rhythmicity
Detect two circadian components
Track phase and period
Fit a daily cosine
Fit a damped rhythm
Summarise scored phases
Entrainment and perturbation
Entrainment and perturbation
Fit a phase-response curve
Compare phase response curves
Measure a dose response
Measure phase angle
Measure re-entrainment
Measure acute masking
Sleep and environment
Sleep and environment
Score immobility sleep
Measure food anticipation
Find ultradian rhythms
Test temperature compensation
Within-recording population
Within-recording population
Compare measurement channels
Align a signal to its peak
Measure population synchrony
Map phase across space
Measure pairwise coupling
Separate phase and period dispersion
Prediction and design
Prediction and design
Plan sample size
Predict the entrainment range
Predict re-entrainment
Fit the two-process sleep model
Predict sleep pressure
Signal preparation
Signal preparation
Denoise a recording
Remove a slow trend
Scale a recording
Group and population
Group and population
Compare group rhythms
Compare fitted group rhythms
Compare group peak times
Repeated measures
Repeated measures
Compare before and after
Track repeated visits
Parameters
Parameters
Complete configuration reference
Outputs
Workflows
Workflows
Analyse a first recording
Choose a period estimate
Measure entrainment and perturbation
Score sleep and shorter rhythms
Analyse a within-recording population
Run prediction and design calculations
Build a publication figure
Replay a saved project
Rehearse backup and restore
Gallery
Gallery
Known-answer examples
Troubleshooting
Troubleshooting
Inputs and fits
Application and exports
Snapshots
Glossary
Developer maintenance
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