Coverage report: 95%

Files Functions Classes

coverage.py v7.14.0, created at 2026-05-26 00:25 +0200

File function   statements missing excluded   coverage
src / optwps / __init__.py (no function)   8 2 0   75%
src / optwps / optwps.py ROIGenerator.__init__   6 1 0   83%
src / optwps / optwps.py ROIGenerator.regions   29 0 0   100%
src / optwps / optwps.py CMWriterUnpacker.__init__   5 0 0   100%
src / optwps / optwps.py CMWriterUnpacker.write   1 0 0   100%
src / optwps / optwps.py CMWriterUnpacker.close   5 0 0   100%
src / optwps / optwps.py WPS.__init__   18 2 0   89%
src / optwps / optwps.py WPS.__call__   1 1 0   0%
src / optwps / optwps.py WPS.run   106 2 0   98%
src / optwps / optwps.py main   31 1 0   97%
src / optwps / optwps.py (no function)   25 1 0   96%
src / optwps / read_processing.py read_info   5 2 0   60%
src / optwps / read_processing.py read_info_batches   8 0 0   100%
src / optwps / read_processing.py iter_pysam_reads   9 0 0   100%
src / optwps / read_processing.py valid_read_info   31 0 0   100%
src / optwps / read_processing.py fragment_interval   6 0 0   100%
src / optwps / read_processing.py fragment_features   6 1 0   83%
src / optwps / read_processing.py weight_from_features   7 0 0   100%
src / optwps / read_processing.py _open_mappability   4 0 0   100%
src / optwps / read_processing.py valid_fragment_features_batch   5 1 0   80%
src / optwps / read_processing.py valid_fragment_intervals_batch   15 0 0   100%
src / optwps / read_processing.py process_read_batches   12 0 0   100%
src / optwps / read_processing.py collect_fragment_features   1 0 0   100%
src / optwps / read_processing.py collect_fragment_intervals   6 0 0   100%
src / optwps / read_processing.py (no function)   38 0 0   100%
src / optwps / read_validator.py ReadValidator.__init__   9 1 0   89%
src / optwps / read_validator.py ReadValidator.valid_read   1 0 0   100%
src / optwps / read_validator.py (no function)   5 0 0   100%
src / optwps / utils.py is_soft_clipped   1 0 0   100%
src / optwps / utils.py ref_aln_length   1 0 0   100%
src / optwps / utils.py exopen   12 2 0   83%
src / optwps / utils.py (no function)   8 0 0   100%
src / optwps / weighting.py WeightsCalculator.__init__   14 0 0   100%
src / optwps / weighting.py WeightsCalculator.fit   20 6 0   70%
src / optwps / weighting.py WeightsCalculator.transform_features   1 0 0   100%
src / optwps / weighting.py WeightsCalculator.transform   3 3 0   0%
src / optwps / weighting.py (no function)   10 0 0   100%
Total     473 26 0   95%

No items found using the specified filter.