numpy<2,>=1.25.2
cython>=0.29.24
torch>=1.11.0
scikit-learn>=1.0
dask==2024.8.0
matplotlib
tqdm
h5py
scanpy
pandas
scikit-image
opencv-python
imagecodecs
scipy
scikit-network
zarr<3.0.0,>=2.6.1
anndata<0.11.0,>=0.9.0
squidpy<1.6.3,>=1.6.0

[annoy]
annoy>=1.17.3

[docs]
sphinx>=8.0.1
furo>=2024.3.31
myst-parser>=2.2.0
nbsphinx>=0.8.11
sphinx-tippy>=0.4.1
sphinx-autodoc-typehints>=1.10.3
sphinx_copybutton>=0.5.0
sphinx_design>=0.3.0
