LICENSE
README.md
setup.py
biobb_pytorch/__init__.py
biobb_pytorch.egg-info/PKG-INFO
biobb_pytorch.egg-info/SOURCES.txt
biobb_pytorch.egg-info/dependency_links.txt
biobb_pytorch.egg-info/entry_points.txt
biobb_pytorch.egg-info/requires.txt
biobb_pytorch.egg-info/top_level.txt
biobb_pytorch/mdae/__init__.py
biobb_pytorch/mdae/build_model.py
biobb_pytorch/mdae/common.py
biobb_pytorch/mdae/decode_model.py
biobb_pytorch/mdae/encode_model.py
biobb_pytorch/mdae/evaluate_model.py
biobb_pytorch/mdae/feat2traj.py
biobb_pytorch/mdae/make_plumed.py
biobb_pytorch/mdae/mdfeaturizer.py
biobb_pytorch/mdae/plots.py
biobb_pytorch/mdae/train_model.py
biobb_pytorch/mdae/data/__init__.py
biobb_pytorch/mdae/data/dataset.py
biobb_pytorch/mdae/explainability/LRP.py
biobb_pytorch/mdae/explainability/__init__.py
biobb_pytorch/mdae/explainability/layerwise_relevance_prop.py
biobb_pytorch/mdae/explainability/sensitivity_analysis.py
biobb_pytorch/mdae/featurization/__init__.py
biobb_pytorch/mdae/featurization/featurizer.py
biobb_pytorch/mdae/featurization/normalization.py
biobb_pytorch/mdae/featurization/plumed_feat.py
biobb_pytorch/mdae/featurization/topology_selector.py
biobb_pytorch/mdae/loss/__init__.py
biobb_pytorch/mdae/loss/autocorrelation.py
biobb_pytorch/mdae/loss/committor_loss.py
biobb_pytorch/mdae/loss/eigvals.py
biobb_pytorch/mdae/loss/elbo.py
biobb_pytorch/mdae/loss/fisher.py
biobb_pytorch/mdae/loss/ib_loss.py
biobb_pytorch/mdae/loss/mse.py
biobb_pytorch/mdae/loss/physics_loss.py
biobb_pytorch/mdae/loss/tda_loss.py
biobb_pytorch/mdae/loss/utils/__init__.py
biobb_pytorch/mdae/loss/utils/openmm_thread.py
biobb_pytorch/mdae/loss/utils/torch_protein_energy.py
biobb_pytorch/mdae/loss/utils/torch_protein_energy_utils.py
biobb_pytorch/mdae/models/__init__.py
biobb_pytorch/mdae/models/ae.py
biobb_pytorch/mdae/models/gmvae.py
biobb_pytorch/mdae/models/gnnae.py
biobb_pytorch/mdae/models/molearn.py
biobb_pytorch/mdae/models/spib.py
biobb_pytorch/mdae/models/vae.py
biobb_pytorch/mdae/models/nn/__init__.py
biobb_pytorch/mdae/models/nn/feedforward.py
biobb_pytorch/mdae/models/nn/utils.py
biobb_pytorch/mdae/utils/__init__.py
biobb_pytorch/mdae/utils/log_utils.py
biobb_pytorch/mdae/utils/model_utils.py
biobb_pytorch/test/__init__.py