.editorconfig
.gitignore
.readthedocs.yaml
.travis.yml
CODE_OF_CONDUCT.rst
COMMERCIAL.md
LICENSE
README.md
disable_xsdata_entrypoints.py
pyproject.toml
requirements.txt
serve_window_capture.png
setup.py
.github/ISSUE_TEMPLATE.md
.github/workflows/publish.yml
docs/Makefile
docs/ai_driven_spatial_pathologist_architecture.md
docs/authors.rst
docs/conf.py
docs/contour.md
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/requirements.txt
docs/usage.rst
docs/tutorials/pattern1_isoline.ipynb
docs/workflows/contour_generation.md
docs/workflows/index.md
src/histoseg/__init__.py
src/histoseg/_version.py
src/histoseg/openai_json_client.py
src/histoseg.egg-info/PKG-INFO
src/histoseg.egg-info/SOURCES.txt
src/histoseg.egg-info/dependency_links.txt
src/histoseg.egg-info/requires.txt
src/histoseg.egg-info/top_level.txt
src/histoseg/annotation/__init__.py
src/histoseg/annotation/evidence_pack.py
src/histoseg/annotation/heuristic_labeler.py
src/histoseg/annotation/openai_annotator.py
src/histoseg/annotation/pipeline.py
src/histoseg/annotation/report.py
src/histoseg/annotation/taxonomy.py
src/histoseg/contours/__init__.py
src/histoseg/contours/pattern1_isoline.py
src/histoseg/geometry/__init__.py
src/histoseg/geometry/tissue_boundary.py
src/histoseg/gui/__init__.py
src/histoseg/gui/gui_app.py
src/histoseg/io/__init__.py
src/histoseg/io/huggingface.py
src/histoseg/sfplot/Searcher_Findee_Score.py
src/histoseg/spatial_pathologist/__init__.py
src/histoseg/spatial_pathologist/artifact_loader.py
src/histoseg/spatial_pathologist/cli.py
src/histoseg/spatial_pathologist/config.py
src/histoseg/spatial_pathologist/full_auto.py
src/histoseg/spatial_pathologist/full_auto_cli.py
src/histoseg/spatial_pathologist/heuristics.py
src/histoseg/spatial_pathologist/openai_client.py
src/histoseg/spatial_pathologist/pathology_ai_api.py
src/histoseg/spatial_pathologist/report.py
src/histoseg/spatial_pathologist/runner.py
workflows/breast_s1_top_graphclust_full_auto_openai.json
workflows/contour_generation_pattern1.ipynb
workflows/lung_addon_graphclust_full_auto_openai.json
workflows/lung_graphclust_ai_pathologist.json
workflows/lung_graphclust_full_auto_openai.json