{
  "command": "bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentd_snv_vcf produce_alignstats produce_snv_concordances produce_relatedness produce_gatk_contam_estimate produce_site_mix_contam_estimate produce_global_contam_check produce_vep produce_expansionhunter produce_htd_calls produce_metagenomics produce_multiqc_all --config 'aligners=[\"sent\"]' 'dedupers=[\"dmd\"]' 'snv_callers=[\"sentd\"]' 'htd_callers=[\"cyrius\"]' 'multiqc_qc={\"enable_tools\":[\"vep\",\"metagenomics\",\"contam_identity\"]}' -j 200 -p -k --rerun-triggers mtime",
  "completed_at": null,
  "exit_code": null,
  "repo_path": "/fsx/analysis_results/ubuntu/hybonly_ilmn_kitchensink_mounted_20260606T053415Z/daylily-omics-analysis",
  "session_name": "hybonly_ilmn_kitchensink_mounted_20260606T053415Z",
  "started_at": "2026-06-06T05:59:22Z"
}
{
  "command": "bin/day_run produce_sentmm2ont_align produce_alignstats produce_na_dedup_cram -p -j 5 -k --rerun-triggers mtime",
  "completed_at": null,
  "exit_code": null,
  "repo_path": "/fsx/analysis_results/ubuntu/hybonly_ont_alignsort_alignstats_dedupna_live_20260606T074825Z/daylily-omics-analysis",
  "session_name": "hybonly_ont_alignsort_alignstats_dedupna_live_20260606T074825Z",
  "started_at": "2026-06-06T07:48:50Z"
}
DAY-EC activated.
DAY-EC activated.
JOBID  PARTITION  CPUS  ST  NODELIST  MIN_CPUS  STATE  MIN_MEMORY  TIME  NODES  NAME
694  i192  8  R  i192-dy-all-3  8  RUNNING  16000M  19:56  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-NA00232-SMN-all-S46-PF-ILMN-NOVASEQ
620  i192  8  R  i192-dy-all-1  8  RUNNING  16000M  21:15  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-HG003-c-GIAB-all-S9-PF-ILMN-NOVASEQ
561  i192  8  R  i192-dy-all-5  8  RUNNING  16000M  22:15  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-HG003-a-GIAB-all-S7-PF-ILMN-NOVASEQ
487  i192  8  R  i192-dy-all-14  8  RUNNING  16000M  23:39  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-HG003-b-GIAB-all-S8-PF-ILMN-NOVASEQ
417  i192  8  R  i192-dy-all-1  8  RUNNING  16000M  25:49  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-NA09677-SMN-all-S47-PF-ILMN-NOVASEQ
351  i192  8  R  i192-dy-all-1  8  RUNNING  16000M  28:34  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-NA03986-DMPK-all-S48-PF-ILMN-NOVASEQ
339  i192  16  R  i192-dy-all-3  16  RUNNING  3000M  29:26  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-HG003-c-GIAB-all-S9-PF-ILMN-NOVASEQ
335  i192  16  R  i192-dy-all-16  16  RUNNING  3000M  30:04  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-HG003-a-GIAB-all-S7-PF-ILMN-NOVASEQ
324  i192  16  R  i192-dy-all-1  16  RUNNING  3000M  30:45  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-HG003-b-GIAB-all-S8-PF-ILMN-NOVASEQ
319  i192  16  R  i192-dy-all-14  16  RUNNING  3000M  31:36  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-NA00232-SMN-all-S46-PF-ILMN-NOVASEQ
201  i192  16  R  i192-dy-all-16  16  RUNNING  3000M  32:50  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-HG003-b-GIAB-all-S8-PF-ILMN-NOVASEQ
256  i192  8  R  i192-dy-all-1  8  RUNNING  16000M  33:02  1  haplocheck_vcf_contam_identity-20260526-LH01121-0004-B23WW2NLT4-NA05164-DMPK-all-S49-PF-ILMN-NOVASEQ
223  i192  16  R  i192-dy-all-18  16  RUNNING  3000M  33:20  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-HG003-a-GIAB-all-S7-PF-ILMN-NOVASEQ
247  i192  16  R  i192-dy-all-3  16  RUNNING  3000M  34:19  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-NA09677-SMN-all-S47-PF-ILMN-NOVASEQ
237  i192  16  R  i192-dy-all-9  16  RUNNING  3000M  34:53  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-HG003-c-GIAB-all-S9-PF-ILMN-NOVASEQ
187  i192  16  R  i192-dy-all-5  16  RUNNING  3000M  36:47  1  gen_samstats-20260526-LH01121-0004-B23WW2NLT4-NA00232-SMN-all-S46-PF-ILMN-NOVASEQ
