DAY-EC activated.
DAY-EC activated.
repo_path=/fsx/analysis_results/ubuntu/hybonly_ilmn_kitchensink_mounted_20260606T053415Z/daylily-omics-analysis
## jem-dev...origin/jem-dev
 M workflow/rules/contam_identity.smk
 M workflow/rules/go_left.smk
 M workflow/rules/mosdepth.smk
 M workflow/rules/rtg_vcfeval.smk
 M workflow/rules/vep.smk
?? pipeline_details.md
?? pipeline_workflow_checkpoint_20260606T055941Z.mmd
?? pipeline_workflow_checkpoint_20260606T055941Z.pdf
?? pipeline_workflow_checkpoint_20260606T061441Z.mmd
?? pipeline_workflow_checkpoint_20260606T061441Z.pdf
?? pipeline_workflow_checkpoint_20260606T062942Z.mmd
?? pipeline_workflow_checkpoint_20260606T062942Z.pdf
?? pipeline_workflow_checkpoint_20260606T064443Z.mmd
?? pipeline_workflow_checkpoint_20260606T064443Z.pdf
?? pipeline_workflow_checkpoint_20260606T065944Z.mmd
?? pipeline_workflow_checkpoint_20260606T065944Z.pdf
?? pipeline_workflow_checkpoint_20260606T071445Z.mmd
?? pipeline_workflow_checkpoint_20260606T071445Z.pdf
?? pipeline_workflow_checkpoint_20260606T073009Z.mmd
?? pipeline_workflow_checkpoint_20260606T073009Z.pdf
?? pipeline_workflow_checkpoint_20260606T074509Z.mmd
?? pipeline_workflow_checkpoint_20260606T074509Z.pdf
?? pipeline_workflow_checkpoint_20260606T080010Z.mmd
?? pipeline_workflow_checkpoint_20260606T080010Z.pdf
?? pipeline_workflow_checkpoint_20260606T081511Z.mmd
?? pipeline_workflow_checkpoint_20260606T081511Z.pdf
?? pipeline_workflow_checkpoint_20260606T083012Z.mmd
?? pipeline_workflow_checkpoint_20260606T083012Z.pdf
?? pipeline_workflow_checkpoint_20260606T084513Z.mmd
?? pipeline_workflow_checkpoint_20260606T084513Z.pdf
?? pipeline_workflow_checkpoint_20260606T090014Z.mmd
?? pipeline_workflow_checkpoint_20260606T090014Z.pdf
?? pipeline_workflow_planned.mmd
?? pipeline_workflow_planned.pdf
?? sbatch_errs.log
commit=d02a1bd825c8c13bac3751d26854b9834c5c3a53
branch=jem-dev
target_code_status:
 M workflow/rules/contam_identity.smk
analysis_root_du:
239G	/fsx/analysis_results/ubuntu/hybonly_ilmn_kitchensink_mounted_20260606T053415Z
