DYEC_COMMAND=/Users/jmajor/miniconda3/envs/DAY-EC/bin/dyec workflow launch --profile lsmc --region us-west-2 --cluster hyb-only --stage-dir /home/ubuntu/daylily-staged-configs/hybonly_hybrid_hiomr_na2_chip12_fastq_20260606T120700Z_config --session-name hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z --analysis-id hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z --executing-entity ubuntu --git-tag jem-dev --genome hg38_broad --dy-command 'bin/day_run produce_sent_align produce_dmd_dedup_cram produce_sentdhiomr_snv_vcf produce_sentdhiomr_sv produce_sentdhiomr_cnv produce_sentdhiomr_segdup produce_sentdhiomr_mito produce_expansionhunter produce_alignstats --config '"'"'aligners=["sent"]'"'"' '"'"'dedupers=["dmd"]'"'"' '"'"'snv_callers=["sentdhiomr"]'"'"' '"'"'sv_callers=["sentdhiomr"]'"'"' '"'"'sentdhiomr={"segdup_genes":"CYP11B1,NCF1,SMN1"}'"'"' -j 125 -p -k --rerun-triggers mtime -n' --dry-run
DAY-EC activated.
DAY-EC activated.
__DAYLILY_STAGE_DIR__=/home/ubuntu/daylily-staged-configs/hybonly_hybrid_hiomr_na2_chip12_fastq_20260606T120700Z_config
__DAYLILY_STAGE_SAMPLES__=/home/ubuntu/daylily-staged-configs/hybonly_hybrid_hiomr_na2_chip12_fastq_20260606T120700Z_config/20260606T120700Z_hybrid_hiomr_na2_chip12_samples.tsv
__DAYLILY_STAGE_UNITS__=/home/ubuntu/daylily-staged-configs/hybonly_hybrid_hiomr_na2_chip12_fastq_20260606T120700Z_config/20260606T120700Z_hybrid_hiomr_na2_chip12_units.tsv
DAY-EC activated.
DAY-EC activated.
__DAYLILY_SESSION__=hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z
__DAYLILY_TMUX_SESSION__=hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z
__DAYLILY_RUN_DIR__=/home/ubuntu/daylily-runs/hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z
__DAYLILY_REPO_PATH__=/fsx/analysis_results/ubuntu/hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z/daylily-omics-analysis
Tmux session 'hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z' created on the head node.
Run state directory: /home/ubuntu/daylily-runs/hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z
Workflow repo path: /fsx/analysis_results/ubuntu/hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z/daylily-omics-analysis
Reconnect with: daylily-ssh-into-headnode --profile lsmc --region us-west-2 --cluster hyb-only
Then run: tmux attach -t hybonly_hybrid_hiomr_na2_chip12_varalign_dryrun_20260606T122800Z
