analysis_id=hiomr_smn12_4na_chip4sub_20260612T015845Z
analysis_root=/fsx/analysis_results/ubuntu/hiomr_smn12_4na_chip4sub_20260612T015845Z/daylily-omics-analysis
pwd=/fsx/analysis_results/ubuntu/hiomr_smn12_4na_chip4sub_20260612T015845Z/daylily-omics-analysis
git_describe=10.0.4-16-geb9dcb2
git_status_short=## HEAD (no branch);?? config/input_manifest.tsv;?? config/patch_smn12_runtime.py;?? gatheredall.sentdhiomr.segdup;?? gatheredall.sentdhiomr.segdup.log;?? pipeline_details.md;?? pipeline_workflow_checkpoint_20260612T020403Z.mmd;?? pipeline_workflow_checkpoint_20260612T020403Z.pdf;?? pipeline_workflow_checkpoint_20260612T021904Z.mmd;?? pipeline_workflow_checkpoint_20260612T021904Z.pdf;?? pipeline_workflow_checkpoint_20260612T023405Z.mmd;?? pipeline_workflow_checkpoint_20260612T023405Z.pdf;?? pipeline_workflow_checkpoint_20260612T024906Z.mmd;?? pipeline_workflow_checkpoint_20260612T024906Z.pdf;?? pipeline_workflow_checkpoint_20260612T040419Z.mmd;?? pipeline_workflow_checkpoint_20260612T040419Z.pdf;?? pipeline_workflow_checkpoint_20260612T040434Z.mmd;?? pipeline_workflow_checkpoint_20260612T040434Z.pdf;?? pipeline_workflow_checkpoint_20260612T041935Z.mmd;?? pipeline_workflow_checkpoint_20260612T041935Z.pdf;?? pipeline_workflow_checkpoint_20260612T043751Z.mmd;?? pipeline_workflow_checkpoint_20260612T043751Z.pdf;?? pipeline_workflow_checkpoint_20260612T043807Z.mmd;?? pipeline_workflow_checkpoint_20260612T043807Z.pdf;?? pipeline_workflow_checkpoint_20260612T045307Z.mmd;?? pipeline_workflow_checkpoint_20260612T045307Z.pdf;?? pipeline_workflow_checkpoint_20260612T050808Z.mmd;?? pipeline_workflow_checkpoint_20260612T050808Z.pdf;?? pipeline_workflow_checkpoint_20260612T052309Z.mmd;?? pipeline_workflow_checkpoint_20260612T052309Z.pdf;?? pipeline_workflow_checkpoint_20260612T054028Z.mmd;?? pipeline_workflow_checkpoint_20260612T054028Z.pdf;?? pipeline_workflow_final_failed.mmd;?? pipeline_workflow_final_failed.pdf;?? pipeline_workflow_final_success.mmd;?? pipeline_workflow_final_success.pdf;?? pipeline_workflow_planned.mmd;?? pipeline_workflow_planned.pdf;?? sbatch_errs.log;
final_return=RETURN CODE: 0
dryrun_command=dy-r produce_smn12_orthogonal_calls produce_htd_calls produce_sentdhiomr_segdup -p -T 0 -k -j 500 --rerun-triggers mtime -n
live_command=dy-r produce_smn12_orthogonal_calls produce_htd_calls produce_sentdhiomr_segdup -p -T 0 -k -j 500 --rerun-triggers mtime
rerun_command=dy-r produce_smn12_orthogonal_calls produce_htd_calls produce_sentdhiomr_segdup -p -T 0 -k -j 500 --rerun-triggers mtime --rerun-incomplete
