.gitignore
LICENSE
README.md
setup.cfg
setup.py
CLEMENT/Bunch.py
CLEMENT/CLEMENT.py
CLEMENT/EMhard.py
CLEMENT/Estep.py
CLEMENT/Mstep.py
CLEMENT/__init__.py
CLEMENT/clementrec.py
CLEMENT/comb.py
CLEMENT/datapreparation.py
CLEMENT/extract.py
CLEMENT/filetype.py
CLEMENT/graph.py
CLEMENT/isparent.py
CLEMENT/miscellaneous.py
CLEMENT/phylogeny.py
CLEMENT/result.py
CLEMENT/scoring.py
CLEMENT/visualizationeachstep.py
CLEMENT/visualizationpair.py
CLEMENT/visualizationpairsoft.py
CLEMENT/visualizationsingle.py
CLEMENT/visualizationsinglesoft.py
CLEMENTDNA.egg-info/PKG-INFO
CLEMENTDNA.egg-info/SOURCES.txt
CLEMENTDNA.egg-info/dependency_links.txt
CLEMENTDNA.egg-info/entry_points.txt
CLEMENTDNA.egg-info/requires.txt
CLEMENTDNA.egg-info/top_level.txt
benchmark/1.SimData_depth_num.ipynb
benchmark/2.CellData_depth_num.ipynb
benchmark/3.BioData_dissim_1.variant_num.ipynb
benchmark/3.BioData_dissim_2.signature.ipynb
benchmark/3.BioData_dissim_3.genomicelement.ipynb
benchmark/Celldata_sum_pf_mixture.ipynb
benchmark/FP_detection_ratio.ipynb
benchmark/ReviewerComment.ipynb
benchmark/3.BioData_EC/Moore1D_correlation_plot.pdf
benchmark/3.BioData_EC/Moore1D_swarmplot.pdf
benchmark/3.BioData_EC/Moore1d_parallelplot.html
benchmark/3.BioData_EC/Moore1d_parallelplot.pdf
benchmark/3.BioData_EC/comparison.df.tsv
benchmark/3.BioData_dissim_signature/SBS1_proportion_pie.jpg
benchmark/3.BioData_dissim_signature/SBS1_vaf_proportion_correlation1.jpg
benchmark/3.BioData_dissim_signature/SBS1_vaf_proportion_correlation2.jpg
benchmark/3.BioData_dissim_signature/SBS1_vaf_proportion_correlation2.pdf
benchmark/3.BioData_dissim_signature/SBS540_proportion_pie.jpg
benchmark/3.BioData_variant_num/1-1.AG_densigoram_raw.jpg
benchmark/3.BioData_variant_num/1-1.AG_densigoram_raw.pdf
benchmark/3.BioData_variant_num/1-2.AG_densigoram_clone.jpg
benchmark/3.BioData_variant_num/1-2.AG_densigoram_clone.pdf
benchmark/3.BioData_variant_num/1-3.AG_stackedbar.jpg
benchmark/3.BioData_variant_num/1-3.AG_stackedbar.pdf
benchmark/3.BioData_variant_num/2-1.Bronchus_densigoram_raw.jpg
benchmark/3.BioData_variant_num/2-1.Bronchus_densigoram_raw.pdf
benchmark/3.BioData_variant_num/2-2.Bronchus_densigoram_clone.jpg
benchmark/3.BioData_variant_num/2-2.Bronchus_densigoram_clone.pdf
benchmark/3.BioData_variant_num/2-3.Bronchus_stackedbar.jpg
benchmark/3.BioData_variant_num/2-3.Bronchus_stackedbar.pdf
benchmark/3.BioData_variant_num/3-1.Total_densigoram_raw.jpg
benchmark/3.BioData_variant_num/3-1.Total_densigoram_raw.pdf
benchmark/3.BioData_variant_num/3-2.Total_densigoram_clone.jpg
benchmark/3.BioData_variant_num/3-2.Total_densigoram_clone.pdf
benchmark/3.BioData_variant_num/3-3.Total_stackedbar.jpg
benchmark/3.BioData_variant_num/3-3.Total_stackedbar.pdf
benchmark/3.BioData_variant_num/3-4.Bootstrap.jpg
benchmark/3.BioData_variant_num/3-4.Bootstrap.pdf
benchmark/EMconvergence/1.SimData_[2]_[500]_[125]_[0.0].pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x.pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x_clone2.pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x_clone3.pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x_clone4.pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x_clone5.pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x_clone6.pdf
benchmark/FPdistribution/1.SimData_FPdistribution_500x_clone7.pdf
benchmark/FPdistribution/1.SimData_FPmodel.pdf
benchmark/FPdistribution/2.CellData_FPdistribution_1100x.pdf
benchmark/FPdistribution/2.CellData_FPdistribution_125x.pdf
benchmark/FPdistribution/2.CellData_FPdistribution_250x.pdf
benchmark/Sex_chromosome/AG_glomerulosa_L1.pdf
benchmark/by_depth/1.SimData-bydepth_decoy_0.0.pdf
benchmark/by_depth/1.SimData-bydepth_decoy_0.0.tsv
benchmark/by_depth/1.SimData-bydepth_decoy_0.1.pdf
benchmark/by_depth/1.SimData-bydepth_decoy_0.1.tsv
benchmark/by_depth/1.SimData-bydepth_lump_0.0.pdf
benchmark/by_depth/1.SimData-bydepth_lump_0.0.tsv
benchmark/by_depth/1.SimData-bydepth_lump_0.1.pdf
benchmark/by_depth/1.SimData-bydepth_lump_0.1.tsv
benchmark/by_depth/2.CellData-bydepth_parent_0_0.0.pdf
benchmark/by_depth/2.CellData-bydepth_parent_0_0.0.tsv
benchmark/by_depth/2.CellData-bydepth_parent_0_0.1.pdf
benchmark/by_depth/2.CellData-bydepth_parent_0_0.1.tsv
benchmark/by_depth/2.CellData-bydepth_parent_1_0.0.pdf
benchmark/by_depth/2.CellData-bydepth_parent_1_0.0.tsv
benchmark/by_depth/2.CellData-bydepth_parent_1_0.1.pdf
benchmark/by_depth/2.CellData-bydepth_parent_1_0.1.tsv
benchmark/by_fpratio/1.SimData-byfpratio_decoy.pdf
benchmark/by_fpratio/1.SimData-byfpratio_lump.pdf
benchmark/by_fpratio/1.SimData-byfpratio_n500_125x_decoy.tsv
benchmark/by_fpratio/1.SimData-byfpratio_n500_125x_lump.tsv
benchmark/by_fpratio/2.CellData-byfpratio_parent_0.pdf
benchmark/by_fpratio/2.CellData-byfpratio_parent_0.tsv
benchmark/by_fpratio/2.CellData-byfpratio_parent_1.pdf
benchmark/by_fpratio/2.CellData-byfpratio_parent_1.tsv
benchmark/by_numblock/2.CellData-bynumblock_0.0.jpg
benchmark/by_numblock/2.CellData-bynumblock_0.0.pdf
benchmark/by_numblock/2.CellData-bynumblock_0.0_parent0.tsv
benchmark/by_numblock/2.CellData-bynumblock_0.0_parent1.tsv
benchmark/by_numblock/2.CellData-bynumblock_0.1.jpg
benchmark/by_numblock/2.CellData-bynumblock_0.1.pdf
benchmark/by_numblock/2.CellData-bynumblock_0.1_parent0.tsv
benchmark/by_numblock/2.CellData-bynumblock_0.1_parent1.tsv
benchmark/by_numclone/1.SimData-byclone_0.0_decoy.pdf
benchmark/by_numclone/1.SimData-byclone_0.1_decoy.pdf
benchmark/by_numclone/1.SimData-bynumclone_0.0_decoy.pdf
benchmark/by_numclone/1.SimData-bynumclone_0.0_lump.pdf
benchmark/by_numclone/1.SimData-bynumclone_0.1_decoy.pdf
benchmark/by_numclone/1.SimData-bynumclone_0.1_lump.pdf
benchmark/by_numclone/1.SimData-bynumclone_B_0.0_decoy.tsv
benchmark/by_numclone/1.SimData-bynumclone_B_0.0_lump.tsv
benchmark/by_numclone/1.SimData-bynumclone_B_0.1_decoy.tsv
benchmark/by_numclone/1.SimData-bynumclone_B_0.1_lump.tsv
benchmark/by_numclone/1.SimData-bynumclone_C_0.0_decoy.tsv
benchmark/by_numclone/1.SimData-bynumclone_C_0.0_lump.tsv
benchmark/by_numclone/1.SimData-bynumclone_C_0.1_decoy.tsv
benchmark/by_numclone/1.SimData-bynumclone_C_0.1_lump.tsv
benchmark/by_numclone/1.SimData-bynumclone_Ctotal_0.0_decoy.tsv
benchmark/by_numclone/1.SimData-bynumclone_Ctotal_0.0_lump.tsv
benchmark/by_numclone/1.SimData-bynumclone_Ctotal_0.1_decoy.tsv
benchmark/by_numclone/1.SimData-bynumclone_Ctotal_0.1_lump.tsv
benchmark/by_nummutation/1.SimData-bynummutation_decoy_0.0.pdf
benchmark/by_nummutation/1.SimData-bynummutation_decoy_0.0.tsv
benchmark/by_nummutation/1.SimData-bynummutation_decoy_0.1.pdf
benchmark/by_nummutation/1.SimData-bynummutation_decoy_0.1.tsv
benchmark/by_nummutation/1.SimData-bynummutation_lump_0.0.pdf
benchmark/by_nummutation/1.SimData-bynummutation_lump_0.0.tsv
benchmark/by_nummutation/1.SimData-bynummutation_lump_0.1.pdf
benchmark/by_nummutation/1.SimData-bynummutation_lump_0.1.tsv
benchmark/by_nummutation/2.CellData-bynummutation_parent_0_0.0.pdf
benchmark/by_nummutation/2.CellData-bynummutation_parent_0_0.0.tsv
benchmark/by_nummutation/2.CellData-bynummutation_parent_0_0.1.pdf
benchmark/by_nummutation/2.CellData-bynummutation_parent_0_0.1.tsv
benchmark/by_nummutation/2.CellData-bynummutation_parent_1_0.0.pdf
benchmark/by_nummutation/2.CellData-bynummutation_parent_1_0.0.tsv
benchmark/by_nummutation/2.CellData-bynummutation_parent_1_0.1.pdf
benchmark/by_nummutation/2.CellData-bynummutation_parent_1_0.1.tsv
benchmark/minimum_threshold/CellData.pdf
benchmark/minimum_threshold/CellData_n500_125x.pdf
benchmark/minimum_threshold/CellData_n500_250x.pdf
benchmark/minimum_threshold/CellData_n500_30x.pdf
benchmark/minimum_threshold/SimData_n500_125x.pdf
benchmark/proportions/1.SimData/count_all_scatter.jpg
benchmark/proportions/1.SimData/count_all_scatter.pdf
benchmark/proportions/1.SimData/count_clone2.jpg
benchmark/proportions/1.SimData/count_clone3.jpg
benchmark/proportions/1.SimData/count_clone4.jpg
benchmark/proportions/1.SimData/count_clone5.jpg
benchmark/proportions/1.SimData/count_clone6.jpg
benchmark/proportions/1.SimData/count_clone7.jpg
benchmark/proportions/1.SimData/meanVAF_all_scatter.jpg
benchmark/proportions/1.SimData/meanVAF_all_scatter.pdf
benchmark/proportions/1.SimData/meanVAF_clone2.jpg
benchmark/proportions/1.SimData/meanVAF_clone3.jpg
benchmark/proportions/1.SimData/meanVAF_clone4.jpg
benchmark/proportions/1.SimData/meanVAF_clone5.jpg
benchmark/proportions/1.SimData/meanVAF_clone6.jpg
benchmark/proportions/1.SimData/meanVAF_clone7.jpg
benchmark/proportions/2.CellData/1D_count_parent_0.tsv
benchmark/proportions/2.CellData/1D_count_parent_1.tsv
benchmark/proportions/2.CellData/1D_parent_0.jpg
benchmark/proportions/2.CellData/1D_parent_0.pdf
benchmark/proportions/2.CellData/1D_parent_1.jpg
benchmark/proportions/2.CellData/1D_parent_1.pdf
benchmark/proportions/2.CellData/1D_vaf_parent_0.tsv
benchmark/proportions/2.CellData/1D_vaf_parent_1.tsv
benchmark/referee1-5.AG/2D.jpg
benchmark/referee1-5.AG/2D.pdf
benchmark/referee3-7/2.CellData-bydepth_parent_0_0.0.tsv
benchmark/referee3-7/3-7-1.CellData_parent_0_0.0.pdf
benchmark/referee3-7/3-7-1.long_df.tsv
benchmark/referee3-7/3-7-2.TN_rescue.a.tsv
benchmark/referee3-7/3-7-2.TN_rescue.b.tsv
benchmark/referee3-7/3-7-2.TN_rescue.pdf
benchmark/with_simpleKmeans/1.SimData-by_datatype.pdf
benchmark/with_simpleKmeans/1.SimData-by_datatype.tsv
benchmark/with_simpleKmeans/1.SimData-by_numsamples.pdf
benchmark/with_simpleKmeans/1.SimData-by_numsamples.tsv
benchmark/with_simpleKmeans/2.CellData-by_numsamples.pdf
benchmark/with_simpleKmeans/2.CellData-by_numsamples.tsv
benchmark/with_simpleKmeans/2.CellData-by_parent.pdf
benchmark/with_simpleKmeans/2.CellData-by_parent.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.commandline.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_containpos.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_mean_depth.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_membership_count.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_membership_letter.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_membership_numerical.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_mixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_npBQ.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_npvaf.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_samplename_dict_CharacterToNum.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_samplename_dict_NumToCharacter.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.input_sumofmixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/0.inputdata.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/1.CLEMENT_decision.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/1.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_decision.evidence.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_decision.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_decision.membership.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_decision.membership_count.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_decision.mixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_decision.results.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard.gapstatistics.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.df.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.membership.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.membership_count.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.mixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.results.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_hard_1st.scoredf.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft.maxlikelihood.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft.xiebeni.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.df.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.membership.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.membership_count.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.mixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.posterior_allsample_normalize.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.results.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/CLEMENT_soft_1st.scoredf.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/fARI_temp.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/membership_answer_temp.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/membership_p_predicted_temp.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/npvaf.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone3.0.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone3.1.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone3.2.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone3.3.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone3.4.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone4.0.jpg
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example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone4.3.jpg
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example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone5.0.jpg
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example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone5.3.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/Kmeans/Kmeans.clone5.4.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/0.inputdata.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/0.inqitial_kmeans.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/CLEMENT_decision.evidence.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/CLEMENT_decision.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/CLEMENT_hard.gapstatistics.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/CLEMENT_soft.maxlikelihood.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/clone3.(hard).jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/clone4.(hard).jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/clone4.(soft).jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/clone5.(hard).jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/candidate/clone5.(soft).jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_decision.evidence.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_decision.jpg
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_decision.membership.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_decision.membership_count.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_decision.mixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_decision.results.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_hard_1st.df.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_hard_1st.membership.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_hard_1st.membership_count.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_hard_1st.mixture.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_hard_1st.results.txt
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_hard_1st.scoredf.tsv
example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_soft_1st.df.tsv
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example/1.SimData/SimData_1D/n500_125x/lump/0.0/clone_4/1/result/CLEMENT_soft_1st.membership_count.txt
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example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.1-4(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.1-5(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.1-6(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.1-7(soft).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.1-8(soft).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.1-9(soft).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.2-0(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.2-0.initial_kmeans(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-0(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-0.initial_kmeans(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-1(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-2(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-3(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-4(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-5(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.3-6(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-0(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-0.initial_kmeans(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-1(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-2(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-3(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-4(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-5(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/[1]/trial/trial/clone3.4-6(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/0.inputdata.jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/0.inqitial_kmeans.jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/CLEMENT_decision.evidence.txt
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/CLEMENT_decision.jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/CLEMENT_hard.gapstatistics.txt
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/clone4.(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/clone4.(soft).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/clone5.(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/clone5.(soft).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/clone6.(hard).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/candidate/clone6.(soft).jpg
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_decision.evidence.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_decision.jpg
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_decision.membership.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_decision.membership_count.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_decision.mixture.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_decision.results.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_hard_1st.df.tsv
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_hard_1st.membership.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_hard_1st.membership_count.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_hard_1st.mixture.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_hard_1st.results.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_hard_1st.scoredf.tsv
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.df.tsv
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.membership.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.membership_count.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.mixture.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.posterior_allsample_normalize.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.results.txt
example/2.CellData/MRS_2D/M1-8_M2-4/result/CLEMENT_soft(hard)_1st.scoredf.tsv
recipes/CLEMENT/build.sh
recipes/CLEMENT/meta.yaml
script/CLEMENT.py