.gitignore
CHANGELOG.md
LICENSE
README.md
pixi.lock
pyproject.toml
.github/dependabot.yml
.github/workflows/pixi.yml
.github/workflows/pypi.yml
.github/workflows/release-please.yml
src/ATACofthesnake.egg-info/PKG-INFO
src/ATACofthesnake.egg-info/SOURCES.txt
src/ATACofthesnake.egg-info/dependency_links.txt
src/ATACofthesnake.egg-info/entry_points.txt
src/ATACofthesnake.egg-info/requires.txt
src/ATACofthesnake.egg-info/top_level.txt
src/aos/__init__.py
src/aos/atac.py
src/aos/example.py
src/aos/helper.py
src/aos/logger.py
src/aos/preflight.py
src/aos/workflow.smk
src/aos/rules/DE.smk
src/aos/rules/motifs.smk
src/aos/rules/peaks.smk
src/aos/rules/qc.smk
src/aos/rules/tobias.smk
src/aos/rules/envs/deeptools.yml
src/aos/rules/envs/meme.yml
src/aos/rules/envs/seqtools.yml
src/aos/rules/envs/tobias.yml
src/aos/rules/scripts/edger.R
src/aos/rules/scripts/scalefactors.R
src/aos/tests/conftest.py
src/aos/tests/test_preflight.py