research_os/__init__.py,sha256=7XR8GytUidbwwZcrvE_t6LdUE5wfAQp797diYCoWFSM,322
research_os/cli.py,sha256=GOuwWlD0_lNflKJEjcON9E4359dO5GydJmi3ZcYFlqs,31617
research_os/cli_doctor.py,sha256=wg8c_2SiNssoHR1QaPq9EwP3BTz_VSWyUOhYPkoAJR0,28720
research_os/collab.py,sha256=5o8Pksia5nAfyQvjRVmdSxJucAkutFeM-aYPf9JcVOE,6331
research_os/config.py,sha256=j61QiHvomNIXjKJkYmCRph-gAf3VF5gvb6pFHHfvm74,1239
research_os/consolidation_registry.py,sha256=oGtfZmH6KmtFOMGMHJIgme5_jZIRV6u3juglqNIT1t4,10059
research_os/errors.py,sha256=e_INjK6alKOyG-vb0JsvJrpLSL-cP-_7Qo_bmy3-vKQ,2064
research_os/logo.py,sha256=rCLQhjVR0moU7gb_rVwmhs-5u4mn5bnlO1uW97OxJuE,3393
research_os/project_ops.py,sha256=EvYGfZ4GGguOFbHSzGyDg2S1--g7BL63wSD9TBzAH-A,97312
research_os/tui.py,sha256=wmhmQb5QNFw7N69A4eOHV3O_aC_gGAPtm7KGRmcMLDk,23867
research_os/verify.py,sha256=Lc9g5rc-Lndoj447vThxNdydAAP2nQds8wBvqXZMUVM,5275
research_os/wizard.py,sha256=sy4WvgU5WPLl1poKfF2IGh_BvALdSYbQPONCQmMh3_Q,31154
research_os/adapters/__init__.py,sha256=dFCcu-WLReDgAw_57f1eIdKYiv_uBtMBfq0xa8sogWA,1977
research_os/adapters/base.py,sha256=UySJntlGwNZvaCIyoeWvL1-Jd9gsdOzyR3uPsraK87Q,4359
research_os/adapters/loader.py,sha256=P1Ah-vxtgY2TPK3pTPWbZpEcyeHMFDH2fbBSFia_fVM,8396
research_os/adapters/runner.py,sha256=VxvHi7u9rvgMXd5w0bEYQX0rjAdRJvq1m8UBExf5Cws,4793
research_os/assets/fonts/LICENSE.txt,sha256=hkE0buOR_5frZscPPV1pV5LPnFs8XXSMYVjUnPeWRuM,33266
research_os/assets/fonts/NewCM10-Bold.otf,sha256=PwTtYFbcrZXiFGMaA88NsNMLImgNcnTwPmOSGo6Q2PM,629164
research_os/assets/fonts/NewCM10-BoldItalic.otf,sha256=jgVrVARLF6yBIHPDvaw7keW273aOmYFLqoZRpdB7Fzg,608856
research_os/assets/fonts/NewCM10-Italic.otf,sha256=82D90BvVKBVMU1cFvvA3IXN9Jalb5iK17xrFQOpW_0Q,721044
research_os/assets/fonts/NewCM10-Regular.otf,sha256=fnv-wd2EVsp2hl_3hGuHZPLgE1dJeCtidRosyTCnxsM,717376
research_os/assets/fonts/NewCMMath-Regular.otf,sha256=klKJgSJ1Bo38ndBqxE3NIGlE7i9Y-aCBhsH9NTlSDgU,1306384
research_os/assets/fonts/NewCMSans10-Bold.otf,sha256=v-d-2cPlRlZPmn1hkVJFJayBL1Gg8ShhIy8CgpFuPD4,670068
research_os/assets/fonts/NewCMSans10-BoldOblique.otf,sha256=5EYaT6zBSokJAK4lZFx3F-_r_HJ0HYoeR2yadanGPY0,569724
research_os/assets/fonts/NewCMSans10-Oblique.otf,sha256=ah03-bpMbbtmaJt84kY3Rapzo6YJuosfowoz5GIv7X4,559500
research_os/assets/fonts/NewCMSans10-Regular.otf,sha256=1wOhzoQd492GLK1vsYBomAmI9ZFnhKeY8b5ooh3vRJI,648288
research_os/assets/fonts/README.txt,sha256=FTuGDT8oFlDST0r2SeScp9FfSi4kpyRxoMhVSSj77uo,19312
research_os/assets/js/MANIFEST.json,sha256=SBmNVohSPOnmJ9IP-3ze16HDJjfWTWY09Kc6Eu9roVU,1329
research_os/assets/js/mermaid.min.js,sha256=e0o3JYsdjqKajf9eOe22FhioYSz9WofRY4dLKo3F6do,2777841
research_os/assets/js/minisearch.min.js,sha256=5hYvypmWgOZ2ZAs3y5PJT0YEB2JOyFPk8myrwR4Oc6E,18499
research_os/assets/js/plotly.min.js,sha256=E4wugQFLl53ACGepPaVbdgWhdJXueN16-0M7fwId_Po,1071091
research_os/assets/js/vega-embed.min.js,sha256=BywFTypjEHJeA4w4px4ABScF4xg1YyRiyXF6I6OE6JU,58532
research_os/assets/js/vega-lite.min.js,sha256=zTIxSx5259h53J8FNLYr5xTfA1VEhsfKI4Gr_QqS0vQ,250129
research_os/assets/js/vega.min.js,sha256=5DLHUaY2P0ph2mKSDMfX69E88J2ClJ-PSGJI-Acdw84,514536
research_os/assets/js/vis-network.min.js,sha256=9T-DPdub-X7-hWuwY31P6I8545mZx-lKS4r8jeihouU,688911
research_os/assets/js/licenses/NOTICE.md,sha256=od3gjrWQy4YmO0DMSBCDFXvWgd-igzkDCdvjA4V1G04,1477
research_os/assets/js/licenses/mermaid.LICENSE.txt,sha256=7J-2fcsl7MxBbtVuGquBkiLIBaKkv-TLGedVa_L_3oA,1089
research_os/assets/js/licenses/minisearch.LICENSE.txt,sha256=cNNzVNY5Vin7me2yjLN6XTVv-iSkjNAqXe9bg6MAqJk,1051
research_os/assets/js/licenses/plotly.LICENSE.txt,sha256=jEXZ6vUML3LdnHq570QHiLpYo1OEhLXFHB8X1RKHUuc,1086
research_os/assets/js/licenses/vega-embed.LICENSE.txt,sha256=Mt9nFI8Pw9sOueJjp7ddB_HrFMYZVQBaSjnGkY0Q0Tc,1528
research_os/assets/js/licenses/vega-lite.LICENSE.txt,sha256=9hiQD9DWQEaWOyn0BZDN0eNBovQUSfmRENgv2B_qgIw,1529
research_os/assets/js/licenses/vega.LICENSE.txt,sha256=Y3J4Mqr2IASisknJM-Mn88kMr0nkGnL0v0Nu32Msvag,1533
research_os/assets/js/licenses/vis-network.LICENSE.txt,sha256=FQmQQoCicngP1pwEuFj1Es8hb440ZKDdmNjzRBb-ztk,10171
research_os/assets/poster_templates/academic_36x48.typ,sha256=O-5pBQFIaP192t-hlwEp3klIxDXmibCaoorIiQl0pIk,967
research_os/assets/poster_templates/academic_48x36.typ,sha256=PQCjQhlf4aA8jbkKbDc1XfGsaoErP-7ByoArjBfIlcg,943
research_os/assets/poster_templates/academic_a0_portrait.typ,sha256=-zOMxxwfvMuAATmGzknG5IyQ04wel05-jyt3arj1tTo,974
research_os/assets/poster_templates/academic_a1_landscape.typ,sha256=tDXia-RQ_Zt8PQAPaQ5mKrDPQiJSibNKnko1ehi-VzI,981
research_os/assets/poster_templates/public_24x36.typ,sha256=ZJFm1poVeOOGJUX5ivxAiO7h5ZUiEY_jDQDzEYfktlE,969
research_os/assets/reveal/LICENSE,sha256=sog-S2EL-htNj_-ExNS4Jcx9VTy9n-xHd8BAaKKFncA,1108
research_os/assets/reveal/NOTICE.md,sha256=2SIC2dXZRvzw1On0Byy6wbUunadTht8f-8JdsIPJc08,795
research_os/assets/reveal/notes.js,sha256=3xIB0Z0DJBool9OcPTh2gXffHL1L3gYyezIcuDRhrok,69167
research_os/assets/reveal/reveal.css,sha256=aPkVoR6_cgPARGV2t-lS_2HF3QITSooib_r2LtQhNtI,54097
research_os/assets/reveal/reveal.js,sha256=RlOLUttIckGS9Zv0b16FGhjjAnd8RvSjTDJwnQENaik,112163
research_os/assets/reveal/theme-black.css,sha256=HxNEsvtdcMvCfc6EOF7CeWhVdXQ-huve32RR4aLkdXE,7201
research_os/assets/reveal/theme-white.css,sha256=l_ZJcP_Wx0X_q5atJsUElQ9mXhj6hRrIhk_BhRzpl4A,7190
research_os/assets/reviewer_personas/domain_expert.yaml,sha256=aMpLotctMaEkLolMSEeBMKxRdVwGcYGF0_d3bJ0KcrI,2806
research_os/assets/reviewer_personas/methodology_skeptic.yaml,sha256=m7ollvrHhfS7Syl9u1IOvNs_lxmffwzzUIs78bTb3Pw,2956
research_os/assets/reviewer_personas/novelty_critic.yaml,sha256=pzcqFzgF2orEUA8a3FP63m_7Hkfz21VFMn23PjNlmeI,3245
research_os/assets/reviewer_personas/presentation_critic.yaml,sha256=anPDgN_pAod_1UwpdJbiFoFJ3qLCw3ORmtsQ-pZJaHU,2793
research_os/assets/reviewer_personas/reproducibility_advocate.yaml,sha256=CeDmK9J4k39vwoIWuPUT_oaxF3KfEJ-iMIchg5Tzjwg,2807
research_os/assets/reviewer_personas/scope_creep_critic.yaml,sha256=zEy5NRWiou6Qvh9xhjFWwUTbfy1LfTGt2J8sNV0X_tY,3025
research_os/assets/reviewer_personas/statistician.yaml,sha256=JUZCo_A1hpYLTT-ticW7qmVkR7a0xFrAV9vIX1mU0GI,2798
research_os/assets/slide_templates/conference_15min.yaml,sha256=_j5JhzEkDolYnSzh_WV-zf90jIZlUd7aORVA9COjbfo,3141
research_os/assets/slide_templates/conference_5min_lightning.yaml,sha256=Re9ad-R131NjCJLwMFrrE6d4N7A0gXZpcevQjbF01Jw,1545
research_os/assets/slide_templates/defense_45min.yaml,sha256=UeJ3J3uil4Ei6VjXHnBF9I1FqumNcKYNA4V6ShoK4fg,7130
research_os/assets/slide_templates/lab_meeting_30min.yaml,sha256=0PrVKRvALpkNOEhw7fKXhIwOBgQectmqnCFqlBobY4Q,3519
research_os/assets/slide_templates/public_outreach.yaml,sha256=FWejqK_MK2Fmwe--iCgRocCYa4UcbhUxEJ-4WJr2bQE,3137
research_os/assets/typst_packages/poster-mini/README.md,sha256=92rvFadiBjBKutECURLQqo8lIAqFmtwmv0dGqwCoAH8,491
research_os/assets/typst_packages/poster-mini/poster.typ,sha256=Y3dtfesPq98dSUxXOskHqjT4NQYtnaKS74gMx6CwHeg,6005
research_os/assets/typst_packages/touying-mini/LICENSE,sha256=sDsebFaCoeAt-76M7_N-iFq31eNYzT_-VMD59ANhLeo,1094
research_os/assets/typst_packages/touying-mini/NOTICE.md,sha256=N9CBZ5O1nngQuFDfVoKkBpwcQchq_VJ77QVqIeT9OK8,676
research_os/assets/typst_packages/touying-mini/touying-mini.typ,sha256=OAL0rT4u0TdCtEIEJwP1IfI9lEn_-j423izXibjrFSk,3838
research_os/data/typst/acl.typ,sha256=VoXMkPdguOf_iNIZA92tb1ZRSc1b1koZCuZ-X32U8-o,850
research_os/data/typst/cell.typ,sha256=jqBk3efoAErnqbIW6r-WnX0M5_0zVP7C67qVeLkUMIo,907
research_os/data/typst/chicago_thesis.typ,sha256=99RhReJUCGAc50ypV9PUcDBFyFBmWKLcTwobLuF9aOA,3571
research_os/data/typst/common.typ,sha256=UbM5EgZXRlhLntX5ZsDRpcNFBzWtLOuqi5g1gEhdM1U,1599
research_os/data/typst/generic_thesis.typ,sha256=g0K0rS2Z9mXZ4AU9txOCFh1C5xye8pE769CEt_71gaY,1395
research_os/data/typst/generic_two_column.typ,sha256=XsFi51kQkYmOsFnH4W2ULerGq07mZOlH-ny75LsDfxo,963
research_os/data/typst/humanities_essay.typ,sha256=bmneni9LeRwBcX8GFuVWYyPiHJL8HxfNWLpIZlmVA48,2998
research_os/data/typst/ieee_conf.typ,sha256=9-AxrvQGbnm8zOox1VRrHzSlZXGRXzRxlvukKZGmyK4,916
research_os/data/typst/nature.typ,sha256=gWdeA5Pm2AVMZ_PufsQ0S7WbPiz415Rz8h6Gr44hvlE,1228
research_os/data/typst/nejm.typ,sha256=otVQVWxp4NYIdUJ2ua1ymqUC6rwE1ytKNzktlsFxr0I,889
research_os/data/typst/neurips.typ,sha256=e3_51sS4cGSPo0Xe8WrGMPfQ_DLw9-grsCmhs2t-Lgo,868
research_os/data/typst/plos.typ,sha256=eiW96_wxnUWeOrZlyWKSCpcSy6rsMVf_-pO9mwJQQ5M,847
research_os/data/typst/science.typ,sha256=VwmyE_1wZzIa8rMUUxcZEJ4We58l8tyUekoAYTRVRts,874
research_os/inputs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
research_os/inputs/papers.py,sha256=lrpunUihEYkX81OlJzE1fFmRyXpa9DbhI-HbOryuHa0,9809
research_os/inputs/paste.py,sha256=9cFaPLR4UA3omtkjspDGQPlIi7OgNSioIGFwK2Z6IEI,7622
research_os/plugins/__init__.py,sha256=ml2MpaEwLP64AvokxscQraXxQd5PsLtlC3ulPFi_e70,1331
research_os/plugins/loader.py,sha256=6VPyghmcY9Np_rthbiDUnNZDhT9i5Vv3Ch0oGsVnHVA,11286
research_os/plugins/pack_api.py,sha256=Lfx5xLVqCNCoKumS6CO_0ujJQrWILMEcVxJ8JgI--e8,5424
research_os/protocols/_embeddings.npz,sha256=m8p01qVP6362sbqeIA8AMWmvyiou-nIox4q4Q8ydcIs,418946
research_os/protocols/_embeddings_meta.json,sha256=3snXhzrKcW1BSzN72F1p2eIMebI8wX260d0MDUfcd-s,204
research_os/protocols/_router_index.yaml,sha256=WjlwGlO9EQn8-4EQUlmtPcQgU0FeKEYAo429XOiLSwY,83188
research_os/protocols/_tiers.py,sha256=yUWigOul7FT-gI5BAlPfMUaY8ZKvglC7jibdPP12FlA,6813
research_os/protocols/audit/audit_and_validation.yaml,sha256=1wO5mbNn4nq_oAW5VNs_PcLkFXZ_-tjsjdY9WTNphyQ,7941
research_os/protocols/audit/pre_submission_checklist.yaml,sha256=Xs_oiRGgrSynav73JbHQyZD2wKxFW3UFLVQuQcH1hZ0,14246
research_os/protocols/audit/provenance_completeness.yaml,sha256=sI7GNdfTExg4vKCUnR286WpkuQZZSLPYzjlU3DmUsr8,10482
research_os/protocols/domain/domain_analysis.yaml,sha256=5WwpoH_9xJANZrh9Y92g1YOStLRdj6n79S0Nh1Jxew4,4103
research_os/protocols/domain/research_design.yaml,sha256=SWeo7-s4cxq1oxiw9TiK9yqc3OEiiQzoU5yp1II2qlI,3016
research_os/protocols/guidance/analysis_plan.yaml,sha256=eBE-u6c0LnZ10HoWnCdR3OZFBbOQHOsOlme0v7wp66E,39813
research_os/protocols/guidance/autopilot.yaml,sha256=gmBVJNATJPY7X1YvCu7Ei1qWQYA4RRvMVUR2YhQEOuw,5454
research_os/protocols/guidance/casual_exploration.yaml,sha256=f1hJPvyeXHOYLuQ1CjnmbuKqQNYLV50DKXq-_f7b-7o,4180
research_os/protocols/guidance/chat_handoff.yaml,sha256=OwEN5fUvuIDfx05JFIRSulMt-9JnSwasaJfOPz2knRU,4010
research_os/protocols/guidance/code_review.yaml,sha256=S8A2xRnK3U_Wp2hCZQGzOTFsaJ0NLbcqbNYBfVFPb3I,6986
research_os/protocols/guidance/collaboration_handoff.yaml,sha256=oRbll-SXZmlIkpd2LHpWUqovORBaR0Aabx6AV2nu-iM,5157
research_os/protocols/guidance/constructive_disagreement.yaml,sha256=nDG6WzjkX9PE7eDhJ8pgepI7wnaJ6YjW5ZeImNYJgY8,10349
research_os/protocols/guidance/dead_end_routing.yaml,sha256=zb39YmC7f5eI4CNSlttCJMA1e3rhDnd_FprHq0iCasw,2040
research_os/protocols/guidance/glossary_update.yaml,sha256=GgqOeCU4d5n3uW6ZPrUaf_x8yY4c3ojsBB8FmIuH9Yo,1516
research_os/protocols/guidance/hypothesis_tracking.yaml,sha256=ZHwHcZmC61A7VqZv4HbpStSCCTrJoNz1L6bSn6boRBY,1724
research_os/protocols/guidance/iterative_planning.yaml,sha256=KEH8SUolIuxAWbsONYxUSTFUX-R9IF3J4gwSPi95K70,3427
research_os/protocols/guidance/mid_pipeline_entry.yaml,sha256=tcoU-XDeYhVf0ntGwySE5ybpyrvgm3th3pEiDs-mM5w,11284
research_os/protocols/guidance/peer_review_response.yaml,sha256=mfogFGMjkZ4x3p6kW_RvwO0GeW0umE3wyTkPKZVnTXs,7115
research_os/protocols/guidance/project_startup.yaml,sha256=VwyppHAY8TxoEu0PvMHUdrxagP-ZSeFcvbrru0_wniI,7948
research_os/protocols/guidance/quick_paper_review.yaml,sha256=Big43yuApDUfaXshUsuHXGsdGVtf03BtHoC7gWlZR8c,4212
research_os/protocols/guidance/revise_and_resubmit.yaml,sha256=L3mtcjivE0pN5pYxPnuCBL5VCklWkKuGBCaHpaDQCy8,11700
research_os/protocols/guidance/scope_clarification.yaml,sha256=fc_A8fncZ0JjqEvtvBMtuRuq0FkHfWa1aLNtur0B8eo,8048
research_os/protocols/guidance/session_boot.yaml,sha256=2s9ZFrQq5xRuv5arUyrSta-6kCDDiTsxD75OpAmxbhE,8575
research_os/protocols/guidance/session_resume.yaml,sha256=rAYzM85Ecp51OJnj1zzwhsqSEcUVYfyw0pp6T6lV_h8,4106
research_os/protocols/literature/comparative_paper_review.yaml,sha256=mRHQeKkaUChe_GiI57fcbvW0QPeAq9krI0ZEBqkhBrQ,11412
research_os/protocols/literature/evidence_synthesis.yaml,sha256=ZKpvoVBvMTxwqKRljqlH0M-NfkAd2dR4kmhWZH_GGWM,2125
research_os/protocols/literature/literature_per_step.yaml,sha256=7p_G7L69_u_YxjbkPK4OKjtkqZ9e7IcO0Y0dzajZvxE,15074
research_os/protocols/literature/literature_search.yaml,sha256=7Sa_chCRqryTcmrgsYM_khQaJ87l1cCqVK_wCadrOVU,7457
research_os/protocols/literature/systematic_review.yaml,sha256=KsChTPmk0tNbJI3B-YVxDd9Yf-vXB_49ZZp0ZJ1rA68,3685
research_os/protocols/methodology/ablation_study.yaml,sha256=a1eCfvj_rj0_C0C3zOhA3nKIA0PKGrOP91IbZmxePtc,3894
research_os/protocols/methodology/bayesian_analysis.yaml,sha256=qOAanHS6BQJHpz7WCUCQK-B9hr7bG3ZkmrXeFWNQRoc,9641
research_os/protocols/methodology/bootstrapping_design.yaml,sha256=j03UWp05KwPxdP-Fkc2klBV-9oXjPkQ-LHbnir5Med8,9130
research_os/protocols/methodology/causal_inference_deep.yaml,sha256=qcAq880McVYcM23zZYxqFu7G6P03uhsQZgz64Mt1PVo,6670
research_os/protocols/methodology/clinical_trials.yaml,sha256=8yz3hBNEUzTt9xNQtkecG4CWl0xLN60IWEQbKPkmpjY,6081
research_os/protocols/methodology/coding_scheme_development.yaml,sha256=XzQ4DnGUOy9JahP8DOPFKBBcAIgXKU4uFlJsggTjLVw,8242
research_os/protocols/methodology/cox_ph_diagnostics.yaml,sha256=OsHGrPxnpo31f3hZHhTjojyAiQH-v6hgK9dTvt8dWLw,11957
research_os/protocols/methodology/data_ethics_review.yaml,sha256=f_PLIquBGdmo2hw6eI6koxy8AtBIL0ouCa6EX1XGDU8,11643
research_os/protocols/methodology/data_management_plan.yaml,sha256=l9mBA5siVp0UWO3v-NhcixGWVS21xICJWvk9z2lNhdQ,10111
research_os/protocols/methodology/data_quality_audit.yaml,sha256=Jf_Qifth9yZu8qc1JJugGemJNQkU_X3fRM0bowjHAYM,10958
research_os/protocols/methodology/deep_domain_research.yaml,sha256=aapkpthJfkv36-iPTkthtZvFhQb96YDYtcRgqrm8bXA,12361
research_os/protocols/methodology/evaluation_design.yaml,sha256=n7AnUjfkt0msa1CoWnaQ0mauPEJIP8B1B24HVmE7lic,11405
research_os/protocols/methodology/exploratory_data_analysis.yaml,sha256=m4AjrNJw7_MpZNm-ARnUDWjOVJGrSK2HD_XRZmIN4rY,11396
research_os/protocols/methodology/external_tool_setup.yaml,sha256=QPCE1g_pULDSf2YcjcjIp5bKmqqYHdRUzipxm8f5b0s,9174
research_os/protocols/methodology/fairness_audit.yaml,sha256=5lz1m2BQHfRDPrBXKjonOym5IxoW8sFwdxYPIsXtG1o,12404
research_os/protocols/methodology/hyperparameter_search_design.yaml,sha256=_QHwHOEwt5ZAv2riJsBwnX7n9vxlq5nLHH2YscHEHls,10967
research_os/protocols/methodology/inter_rater_reliability.yaml,sha256=C5adw7KRku7fElrej3GXPB7NdWV80TPmGiKoXNcxsNI,10941
research_os/protocols/methodology/interview_guide_design.yaml,sha256=JzQTc5kKZ7b4oEvv5yUrr4_ry04Nb5G5kjsJWkuFHgc,9082
research_os/protocols/methodology/machine_learning.yaml,sha256=5rUaswuxc5t324bIMmoNEC8pGi_Id7xytZTLBeCH1FQ,7648
research_os/protocols/methodology/mcp_ecosystem_integration.yaml,sha256=LSnHAWuZbUa2ClWF6kVRTtwrj-rwQYiAGeA7aVVA9oI,10517
research_os/protocols/methodology/meta_analysis.yaml,sha256=CDUgC_sbZE6CqoXd3UkKXbaG3x8fYa78IPb2oRfcx1c,4964
research_os/protocols/methodology/method_comparison.yaml,sha256=twtav2z73-7Jj6AhnSyb-OPhJy1mBMUd5Pscwb-hMLc,14022
research_os/protocols/methodology/methodological_consultation.yaml,sha256=_mEtxEOkLuvB5MubqO60FCrsXAkitbQDSaFvMdUc8Wc,9863
research_os/protocols/methodology/methodology_selection.yaml,sha256=Uzl4ryUH7j5BmF9gAq0aptyYon5WceYMfoCFvMZWROs,9555
research_os/protocols/methodology/missing_data_strategy.yaml,sha256=xyIPQd-AKQDIVMA7zOp96TRfTtXzsRDM2oODJS4ZYoY,14666
research_os/protocols/methodology/mixed_language_orchestration.yaml,sha256=SkjVMSOj1u3tiVUjSMYKdyFR5_cfQJBFmX15OxtmH0s,6935
research_os/protocols/methodology/mixed_methods.yaml,sha256=17oGf0KDRcBFQLr_bLhIOn-a1SVTOqXtvN7eHA2lBJ4,4479
research_os/protocols/methodology/multiple_comparisons.yaml,sha256=o-DDPCUjP-5emAW-l9J4id1-mpntMfXotd2YUUHI_6Y,10518
research_os/protocols/methodology/pick_tool_stack.yaml,sha256=GV36LosBtoG3WDjoQmTuTIjOSYFDOponSKaXFQYQGIk,6544
research_os/protocols/methodology/pilot_study.yaml,sha256=0g-g7n_BXwFujTsTgH9tnS1XNI3ITMrNWnX9wz0I3WQ,4220
research_os/protocols/methodology/power_analysis.yaml,sha256=3yubZDiGOHe6yWdCBA-yqkC6OMBT74uuZAbvmNGjdBM,12184
research_os/protocols/methodology/preregistration.yaml,sha256=LL7rC2g16DfSt6R_e-409655R2PHlfFcmhmImtF5mM4,5574
research_os/protocols/methodology/qualitative_pii_redaction.yaml,sha256=eWiteHGjxYxehHomY-BTtapBbPBOjN2aRilgi0arntY,12824
research_os/protocols/methodology/qualitative_quality_audit.yaml,sha256=WlnCa9_ZuP7rlyhubJN9wamDmjmccDhbouWlZ-f86GM,12144
research_os/protocols/methodology/qualitative_research.yaml,sha256=v9m5ah6F6ZtrEKmj0DW3Iv1_qGM0nSqjK5XA-nU-IiQ,7984
research_os/protocols/methodology/replication_study.yaml,sha256=CZgMZg3yLxvSmuz3eEac2x3HtrMPlKHP_ujG11VtXGY,4742
research_os/protocols/methodology/reproduction_attempt.yaml,sha256=SlhTLStsGA6cO06IxKv6d6B8ArpkWAf9LbgbZHaK0yE,13089
research_os/protocols/methodology/simulation_studies.yaml,sha256=H3I71bukoECMM8i7hbSJMD4ha9ZsaZL6bfvGQ57OobI,4384
research_os/protocols/methodology/survey_design.yaml,sha256=s_1BEjAwOk2izx9tJ0r911vj00YqmjGZoJ9G8_YFPs8,11026
research_os/protocols/methodology/survey_psychometrics.yaml,sha256=Ty8OKcy2wWYQDUHXgOrHdU2dDY2kXz9httytFVd8pGA,5019
research_os/protocols/methodology/timeseries_analysis.yaml,sha256=L8TWrKn4Tsn3pboYMDpdAwtpa4SvBRXR1U5RAO6wqqQ,7985
research_os/protocols/methodology/tool_discovery.yaml,sha256=unvGn9Zg6uwrnz4YQox7Fwdl7iqji2RcfN17LpEzlps,2202
research_os/protocols/methodology/uncertainty_quantification.yaml,sha256=n0IgbWZpuzqRLYqiFtdhyz0c39amHA4saCD-ClJ-eH8,9730
research_os/protocols/reproducibility/reproducibility.yaml,sha256=HBUO9uHaMjeNPg9jLtnaOr9n98n9rMJYQHTrWF5LmBU,4124
research_os/protocols/synthesis/defense_prep.yaml,sha256=9Y3OFcpTPH0RxUnMCKF-uAYReI3eCuk3fGNgi6aigbM,9767
research_os/protocols/synthesis/humanities_essay_structure.yaml,sha256=lMu-oANvGnf8EczRZgHQxX4nss2LQqDYAd_ez7xIfqs,10511
research_os/protocols/synthesis/journal_selection.yaml,sha256=kV78Ukmy5E--Y1gANsk1imt9xTSR3yOfkjWaE7cdwO8,9754
research_os/protocols/synthesis/manuscript_outline.yaml,sha256=HE_Jz7bZwldLf9C_eS-CjTdCN-tQZuT8w-SYe99BLMg,9113
research_os/protocols/synthesis/printable.yaml,sha256=Y0yk0lSx-MAHPkjGR_D9vGMUggAa1XbmRyRs0kbiwbY,10574
research_os/protocols/synthesis/reviewer_response.yaml,sha256=snWpq7NWfIJkuQBEl0jD2p5DeTWzp-UbWJFcWufR-Ms,7542
research_os/protocols/synthesis/synthesis_abstract.yaml,sha256=Hy8tKoDB5tEcYbfIyg_HYCbWvhj6bXQ0iz2ogUQ-BJE,2871
research_os/protocols/synthesis/synthesis_cover_letter.yaml,sha256=ACCNwh4U_eOPgNSgabtiAE4GlIO8FdNzjn1mEfDM9c0,9442
research_os/protocols/synthesis/synthesis_dashboard.yaml,sha256=Y3MsYjYAppl2HQguMdcQ8fwXqj59mz5xWUv3qHpXw2s,16223
research_os/protocols/synthesis/synthesis_from_inputs.yaml,sha256=mYmhaYEmbpn4tfnbGvpBIiOvfxkr9WhDei1swQosWJw,11388
research_os/protocols/synthesis/synthesis_grant.yaml,sha256=sc1UT8MldyPJD9fAU7Hhky3E-z8kKks0lxyLuMsPd7o,6275
research_os/protocols/synthesis/synthesis_handout.yaml,sha256=bzdK_bZaknC5hcztmzSG8eYmP6qB9YV32eFWz9Ysg3E,724
research_os/protocols/synthesis/synthesis_lay_summary.yaml,sha256=E5Xx1irbkWYdt-4cH5PpOypB5OEnzEt0cluyZFKjTXA,11491
research_os/protocols/synthesis/synthesis_null_findings.yaml,sha256=2-_hjtnCpk14tNBrdOaHtzQAY1o0Pjb_BKVyJHmOFwo,5899
research_os/protocols/synthesis/synthesis_paper.yaml,sha256=dSq_sbrZcBQ_tufYSmu3_2jJFScnKqc_jSJ-GLQibCM,17284
research_os/protocols/synthesis/synthesis_poster.yaml,sha256=ka4jtYmX8FHiWIdvfIA4c5cTpwHUMX5In5cpUvF_LHs,681
research_os/protocols/synthesis/synthesis_progress_update.yaml,sha256=037p_wEHjhGefueTUWRDxtazR91XMZJOb3Dk-eDv87U,9784
research_os/protocols/synthesis/synthesis_report.yaml,sha256=MLz40SXmyttY-Us6lGh5wBtT3wFuY1FQxLYI5dFuq4c,3711
research_os/protocols/synthesis/synthesis_slides.yaml,sha256=mwm6_lsb4_evGKtDOCKEGeG9CoeCQp69xJQbqiEWhcY,13009
research_os/protocols/synthesis/synthesis_title_workshop.yaml,sha256=2C1BnTetJ42RnojOvQ5pL5LEZT9wxvpHMi5gsFtA5AA,9681
research_os/protocols/visualization/animation_design.yaml,sha256=TdJUEBUiFEVsQZIvIWVs9Qrpn26qipaDzZds2GjNVRw,9348
research_os/protocols/visualization/color_accessibility_audit.yaml,sha256=uNMRMjNTj5hDsRjue_51kqqkDeUH0pAepn2l_BsIWMQ,9826
research_os/protocols/visualization/distribution_comparison.yaml,sha256=wXZpykIM_96w0BxZ4dlgb-tQwCiS-uObJAlO8FCa0QM,8748
research_os/protocols/visualization/figure_critique.yaml,sha256=IvFLUBg470cAmrlj3X7nUU6iOUCKwsGb9X5pDrFcFeI,8957
research_os/protocols/visualization/figure_guidelines.yaml,sha256=QSmUOijnkFn6-ZMGD2_p41etKIqMLmhj1EJlTZTS23s,32542
research_os/protocols/visualization/figure_narrative_arc.yaml,sha256=iulEqlywvuEr8WxGpg_te2PEHpsePF4oDqHfwDq2_M8,10397
research_os/protocols/visualization/geospatial_visualization.yaml,sha256=1G-2EXds1MgvdhCx-Ga6Ck3nj7w305RWXxIXwVyQx3E,10699
research_os/protocols/visualization/interactive_dashboard_design.yaml,sha256=BF7VjF2I9I7CNnwWk9M1mUldFIoc1R-QikK4prtZjKM,12909
research_os/protocols/visualization/interactive_figure_design.yaml,sha256=7BMooYHisJtRGEizWQx_2mTjg2D_qWifCCZkVYuLJss,9350
research_os/protocols/visualization/multi_panel_composition.yaml,sha256=boIfDs0oFtJrt9SvRUU2OzN7NyXbmn6FlU6RnupRaH4,10211
research_os/protocols/visualization/network_visualization.yaml,sha256=YE6qH2JdfOQCENHMncZLe505-wWW_qChcm9P-inLw1o,11290
research_os/protocols/visualization/showcase_visualization.yaml,sha256=1aCTRwqYcVhxbhT2ZlHjnge-EMi7pE8A9scpAJ6ACFU,12646
research_os/protocols/visualization/uncertainty_visualization.yaml,sha256=FWZxGRCMl0lFOa-qgJeBkTkTAB3CpXwXdX7QN4eozQg,10794
research_os/protocols/visualization/visualization_workflow.yaml,sha256=xNJlT3UE6YT9LiLCE9MJVsY1M_k6oFDdvYfv2DB8hf8,11441
research_os/protocols/writing/writing_analysis_log.yaml,sha256=w9NKciwOQrFEd6BIdbr1_CXDk5iLR0ivBAURO1E-Mwo,1570
research_os/protocols/writing/writing_citations.yaml,sha256=bKnPaMTywIY171ptNiCdA-ClhFJr9EUlkfqie3l7uHI,1503
research_os/protocols/writing/writing_conclusions.yaml,sha256=pXvwyJEr7e8iG4bFvHoOm4LS2X5vfKczfOy5Z1Cy7XM,1398
research_os/protocols/writing/writing_core.yaml,sha256=6PuEMkIvr0AwixzYwtKzaSWUpXSA__iv8jBgVFh6T4A,10810
research_os/protocols/writing/writing_data_availability.yaml,sha256=WqmqSzljhLJYopngpryRWc_DotFSj6IOmw0CV_uomrI,11045
research_os/protocols/writing/writing_discussion.yaml,sha256=eEoviShKwNg-5vZ-irOosCYnSp-Hqnwet4RBRAAb-Dg,14389
research_os/protocols/writing/writing_limitations.yaml,sha256=cefyetqM1xLZjY6tjXIcW9A8c4ZfWOX0NmiaAxnqyvg,9870
research_os/protocols/writing/writing_methods.yaml,sha256=4qYI5hOGrGk14MM9PhGe6xESS46g7xiYNDdfOjTxCnw,3689
research_os/protocols/writing/writing_readme.yaml,sha256=qGmDF8S-MvExj0XdvX2D8ULrKlHqejR6tjVLvn9Lj9M,3466
research_os/protocols/writing/writing_results.yaml,sha256=ftR65QrgYww5LrojowuGuX1VdinaytbZp9Cn9oQRyEk,11619
research_os/schemas/audit_finding.schema.json,sha256=05dE8U_tE9C8PjXnDDT3ux9oneFrHFWACdQBs5IYTqM,2790
research_os/server/__init__.py,sha256=xEycgym-mnep1m_L8pxRD4XWuklc_Zx3TpLOpcjZXAY,4977
research_os/server/_handlers_runtime.py,sha256=Hws_YE13n-ESOQMCEI-t-Y7kSMzs7JV2LCK2kXFDNYw,6130
research_os/server/_helpers.py,sha256=LBzrsBnKzPFVpKnTxt9f5CXIOpOlCEBB7ds9CSgAIjM,10592
research_os/server/aliases.py,sha256=hmMfnbW9wuaj4aonopqR_mNFSvBspf45RM6hb4cwfH4,24936
research_os/server/dispatch.py,sha256=6NQ37MiJLAXsfN8V2EQk4Qc7_qMtIu6t7YlGluVb_r8,6589
research_os/server/entry.py,sha256=OqpLeJOppS1IyujvDBFUrEdl2BdLusrppAtcgCdaZ1Q,9163
research_os/server/envelopes.py,sha256=nP8ZRKrmVHnIjWSG65MTCtmnoYr3A5rGZITXFFS_ibk,8853
research_os/server/errors.py,sha256=aUVGys9sGAszxlebbn-91ONO4ecaSP378Pv6dCHitR0,2752
research_os/server/optional_deps.py,sha256=yDEY2yoNph8gAYXlBOr4ceJm1nPSbztwnzR_dvzD1vg,1721
research_os/server/pack_loader.py,sha256=v011gA26YgfQ9JOx7Lu8iULLuK-RuV4VG5SNfz36X4k,2934
research_os/server/rate_limiter.py,sha256=EBaKEJnaGLVyQVM-6spr-jAagX2fWE7RqmWBBytGfbg,902
research_os/server/registry.py,sha256=Hsu1m5zt_Y1ISzV7kJi0b8NO13S516yOpJ_QtBRoibY,454
research_os/server/handlers/__init__.py,sha256=GAzhVNks3S5cP4Eixy3NMB4GCCXSOchU2n6W2IRuHtI,1501
research_os/server/handlers/audit_core.py,sha256=aj-7WKpIZz7Pc0v2Phz0NHS8mJZ2mIgZKH_K5FQK4Ic,21395
research_os/server/handlers/audit_gates.py,sha256=3zFT9LH5QEBQDS-Zauq6_NwP-pzeYuQeZqo2tmzHUk0,7907
research_os/server/handlers/grounding.py,sha256=F9Zj2aHwjsn9TWP4kuiLqJwy3sqT3y3vJXVeScthXpI,15968
research_os/server/handlers/meta_help.py,sha256=nOZ26nq9bLKao1c8ospCzlSdTSOWeHNqO38bLnGLstU,22141
research_os/server/handlers/meta_routing.py,sha256=e9ATMqKUSlU79YWe_3TIHFJUrkz04mIgTYO38zkDuRg,13685
research_os/server/handlers/meta_sys.py,sha256=42tYl4pEa14TLtLAfkvdTRCZwDQoaA16POdu9aD5hB8,9366
research_os/server/handlers/meta_workspace.py,sha256=V_aH0xug9Uwevs50YH_4U4e96BJPyMUIPM3WHrzbNVk,14290
research_os/server/handlers/methodology.py,sha256=-k6KEouLssIJxkuPG6LN8mjgUWTtwWhv5lTCHfs9Dak,18889
research_os/server/handlers/research_exec.py,sha256=MSVIhz4GiDM1aD0VapquviW_cNlE0MsVSqonTgqsKHg,12281
research_os/server/handlers/research_search.py,sha256=MNVSpRIyYWx4osuOIIG733wKQ9rDpAShM8ICrhNtVrY,11463
research_os/server/handlers/synthesis_reviewer.py,sha256=8wbJ2rbiqg6vgFtyOa0WimqfCi84wZYg6mKGiF80EaY,3617
research_os/server/handlers/synthesis_visual.py,sha256=D8PUrZvsv8nn6zvBTRh91LFJl-Fowyw28DWLDHhlLGY,16700
research_os/server/handlers/synthesis_writing.py,sha256=ptNU8ONlfG-O93Yp79KfLsku-l_XrbP9DDOBiN7DlXk,18569
research_os/server/tool_definitions/__init__.py,sha256=L9QlazH6lE8P7h8iDLpHmLJzznafTx7LmSR-aekdPTo,742
research_os/server/tool_definitions/audit.py,sha256=F_ELXE-eTOdShUS_G7fwEfsb1HGN__Wo6a-ccr0d-QM,16022
research_os/server/tool_definitions/grounding.py,sha256=iNfh5FgiX0iEqpsJbPe5GFUyW4GdOfQZiYKRJK8PgYA,10583
research_os/server/tool_definitions/meta.py,sha256=2_uhapit2vSQaqU0dlxW5LQiF42bW-sboehXpi5zjdc,34296
research_os/server/tool_definitions/methodology.py,sha256=9oNSabdjfq8cSKIczU_ae1SFoe0O3tNeDAxQCJF2aoc,21466
research_os/server/tool_definitions/research.py,sha256=6KhJ5DagNuyZkCv8qgHQ4gc7QszdJ5IRLLLMUNg0aLE,22438
research_os/server/tool_definitions/synthesis.py,sha256=aPKmPKHxZCCdRdyjLnrip-iDDbfdcvJ3vX6aWLQZL48,29687
research_os/state/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
research_os/state/state_ledger.py,sha256=DbhMTMG2yoICraEkp7gnMR39CxMsy0aToznk_8cEe4U,30666
research_os/testing/__init__.py,sha256=jqVo0RAq0H0OniE1SeK0p9BNV8eLFWJPJWC40cWCy5s,449
research_os/testing/reliability.py,sha256=glwpeF3Vq4bVGDX3V3hopBAyJLWOZxhTgrgnTnbwe9g,4498
research_os/testing/stress_runner.py,sha256=0YXg5e-7k5POuEtBpjZFpYFfj5HNR6oqKNOxXRzzEjw,17533
research_os/tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
research_os/tools/actions/__init__.py,sha256=7hBEivfDT-Mg-r4Ny5NkLdyor3-KBSpK9ooFVC7CbBA,764
research_os/tools/actions/listers.py,sha256=J1oHxSw2a55xMfbEq0c_91pCaP4Ve8AHaBr1kPX7KXE,7646
research_os/tools/actions/protocol.py,sha256=Tmd29h3tCOrzXOOKdyqj1q_S0Vp6VQNz5yDECdA7h2w,35430
research_os/tools/actions/router.py,sha256=6r1zXJBvCryPEOOIZJNKChQinpRy1J9jTkAsTHq8upQ,63926
research_os/tools/actions/semantic.py,sha256=YCzWVasjqNkCqIjRbPlYj-oCtqm_0V92NbU24lCBL5U,19611
research_os/tools/actions/audit/__init__.py,sha256=-HUCoQvGTGZSOfDVEhCHGF8sb-UgqvHIdXqgTBIy-qo,1766
research_os/tools/actions/audit/_base.py,sha256=xDEZEisMhv4msqlQbx6gYY4lSRtxQ_FHmoRKnZ1AWZ0,13483
research_os/tools/actions/audit/audit.py,sha256=I3ZsxYt8CZi1sZ9G5iBsOPXTeSGlFjzYoxr2rnEyC-g,95368
research_os/tools/actions/audit/claim_grounding.py,sha256=JaRtyIP0bCxOQG-UYjc3rAZ-9hbtQ0UPN6iDM-dnmtk,15737
research_os/tools/actions/audit/code_quality.py,sha256=YSxgy1CNmD8Y3wqPzpiAC9keGpHSfDOL8_Dn8ZDv_Tw,22739
research_os/tools/actions/audit/coherence.py,sha256=Lq564TF7JZRCAgzZkGCoiI6Pfojrbw4YGGKxM_eVq1k,7279
research_os/tools/actions/audit/content_depth.py,sha256=KscNOaRFDRDlLbTjP2HKQ2IFlZDMNe_n4R6PCuVwLh8,16164
research_os/tools/actions/audit/cross_deliverable.py,sha256=uSuSLvx1YeOkTaKwjRd6S3Dgw4U0C-ZPV-IBxbq9Ltk,39711
research_os/tools/actions/audit/dashboard_content.py,sha256=YCHyUzqJBtYd_hcLahpKLB6g8an-USs3UJFYafoposU,21757
research_os/tools/actions/audit/figure_interactivity.py,sha256=2OAC0hpOJlcH8EjNQ8ZJKGT6YkIx7YfgCe6fNyCTJ10,19294
research_os/tools/actions/audit/findings_query.py,sha256=g0jykgf52gIsZ0oGKEa1Xm3wo6H94gTt83_4RsoMfrk,15069
research_os/tools/actions/audit/md_audit.py,sha256=u75XOgKbytDi5rL19fUschO1cmFS2IKusYXJcsWLjh0,2491
research_os/tools/actions/audit/null_findings.py,sha256=-XnbvNOoeHOd9uWog5V-gx_li6Sv30zLtuMJhITxDl0,7632
research_os/tools/actions/audit/preregistration.py,sha256=ZalFcWgIbJ4svZ89BzLwoekTQ5UefPZF3P0PMsylB2Q,16160
research_os/tools/actions/audit/prose_quality.py,sha256=JY26ZdTkiKgejBnrJB_LGx5VCyjBdjU02I-EBhHfZ2I,25245
research_os/tools/actions/audit/redteam.py,sha256=5mQAqNMxq-AsOeBpdxvQAdcFH8JmEymmOedwaqaI1Ug,12422
research_os/tools/actions/audit/step_literature.py,sha256=-v2f-7OqQJxodHp_TYo8eqUFGazUe-34mPmsr23_kks,25604
research_os/tools/actions/audit/synthesis_audit.py,sha256=I57X5_NE293eULBlW9AUJaDe1FtBC_LKOLAk0ap6kR4,9564
research_os/tools/actions/data/__init__.py,sha256=4f7ams4fFoaF8rbDeGHGumrgTlmW7dINGvGeTg0X-hE,548
research_os/tools/actions/data/context_intake.py,sha256=NMamlzNsVAdwJ4v4GWZdwmI6IO7TY67s0Krg5oh-_zs,8928
research_os/tools/actions/data/data.py,sha256=VYY55yjfxOKeL2DVHeSgWnvZMcwHErZJtsvQXyTEy08,8849
research_os/tools/actions/data/intake.py,sha256=BO_W-CMyvS5m4EpgbC8ceTkJjqLzheWWlr6jxzipvoo,26572
research_os/tools/actions/data/intake_freshness.py,sha256=BvRHTsHIbnPb_l1FhQAmPA62PXdBdfxiVoBeCxv-YiI,4073
research_os/tools/actions/data/profiling.py,sha256=cZGBfPRVjDwRKtjmdOBCgWzVl7KpIRRvuDqWJ9qaRwk,2732
research_os/tools/actions/exec/__init__.py,sha256=RIQJKngHPWvBOz6cd9VZqFXAfp0QmAZ7dofTUhJiYO0,629
research_os/tools/actions/exec/cluster.py,sha256=nGhDYQrwf_fdcFO1RmLdk-aGmxvfHyjvQngoNh2FxBE,12701
research_os/tools/actions/exec/environment.py,sha256=DB2bAAbcQQFZeYEgOwAij9zWlr0leD8AKpQZJtlrI-s,33790
research_os/tools/actions/exec/notebook.py,sha256=fn5DEME5HmNorTOVPHE8UXR7S2_mhqtcu5dsigwcuVo,8997
research_os/tools/actions/exec/scripts.py,sha256=9CoGgx65ZLj7mf58hvt-Z9aWDpooh_IbfWizhgf0N8Q,4423
research_os/tools/actions/exec/sensitivity.py,sha256=luAIkjkU3esZRGcpcRRu1U73FtmqOrb8rnufF4tZRBc,15148
research_os/tools/actions/exec/step_pipeline.py,sha256=MhlsG5iprmxS5QjjChH3SKuuwHm8plvppLvXpgjUezw,26457
research_os/tools/actions/exec/tasks.py,sha256=U9Qurs79q3uPFpEeNTrlWiK9IZcsMN6r7h1YwxjbNFM,16535
research_os/tools/actions/memory/__init__.py,sha256=GGNTI-8zwr9Ufs5Uz4vD7Lzz_Fd1dwQhq2dgXRx-j8U,182
research_os/tools/actions/memory/memory.py,sha256=CnR6LZqZPVhRU8LEQgwiHDZz2RpzeKU990HlIBvNnZg,4313
research_os/tools/actions/research/__init__.py,sha256=KlNxpj_Ths8ZaZ8blsrr5iJn-WEMunzEU7zrS9Ddt7k,969
research_os/tools/actions/research/citations_isbn.py,sha256=4NihYkSgmkCuEvWL5VKt3MekNDJo4MBBgySK_QRs7jY,10617
research_os/tools/actions/research/grounding.py,sha256=3iCNgcQ_B5yf0H2Xy3sl5L-PTwiAAaappWjRLV6_Qyo,17682
research_os/tools/actions/research/lessons.py,sha256=_W8tAE2ntKeSl51tNkJjdFZRVA2CQmBIx0w64yD_IjA,6287
research_os/tools/actions/research/planning.py,sha256=pgIaOqc-nQ_39wPTmEnBEiht39yxVOQOR-xkPThfbyk,28754
research_os/tools/actions/research/research.py,sha256=hXpULdY6J5DDjJzNsfe8wvv3f1wqAQM-IrOyDcCa4oM,36169
research_os/tools/actions/search/__init__.py,sha256=SoNJvwEjAp6ppqKQU9yCc5HShqJ5tVYUq9GmGshIVg8,454
research_os/tools/actions/search/literature.py,sha256=CzurCJmwA124_v3fhYrQkUfRUIG-PIRO0hWudvoz670,18866
research_os/tools/actions/search/search.py,sha256=FDr6L9ifv35QFrNu53o_9q3ZNmJsm9QoSwQVrc9mST0,19390
research_os/tools/actions/state/__init__.py,sha256=a9Unac9F2qA9XVIo1HQjUsKWhDqgXcJwhZZSSTLIAKM,2023
research_os/tools/actions/state/certifications.py,sha256=6qvpOHNtT2WowPHg2rRoIsBeqJVDKbmeC0c5uiNIOK0,6999
research_os/tools/actions/state/checkpoint.py,sha256=WDfROu8OhdArMeNfc7Wl4fX6NqxZPD2UhEH4EKnQvIM,4331
research_os/tools/actions/state/config.py,sha256=wxoZL5FeE4xpqq1aYPFdAvC-LuDKSza8EAFgMVEs2II,33494
research_os/tools/actions/state/extractors.py,sha256=r0FGiUU-nB7bAgKkQBGS7hJzgcayTWCrzMf_cVkCTB8,27738
research_os/tools/actions/state/freshness.py,sha256=mF4bYeUbBDSpLXNmxukeY-NM3ARj4sXrYh-ANRXUiHs,5247
research_os/tools/actions/state/interaction.py,sha256=-6yGG74fmo7iiPUIhgdFztYlhVGui0J0ogFvkfem4Y0,10113
research_os/tools/actions/state/iteration.py,sha256=Qk6Jq1v1KlHxbxzA-I-dRcHJp_j8OECR0P6lQcuH_kg,20635
research_os/tools/actions/state/mistake_replay.py,sha256=8npgbbk8--4e8Zr_uRSHA_EhaTs_DyHbAB-Dq18OxuU,3777
research_os/tools/actions/state/path.py,sha256=8LiDC1VJ3q3FqEZ5gRF2NEerpjq8FIkGNkrtftjGibE,82389
research_os/tools/actions/state/paywall_memory.py,sha256=n8kS-Y1yLRnbIad2MqqKq5o7aKY16qJhrWpKo-G7Rqw,5243
research_os/tools/actions/state/provenance.py,sha256=pXn_L9fn4fYgujHu4lF1GR_vj3gBCgVW4jtaXe_efcE,13759
research_os/tools/actions/state/quick_mode.py,sha256=WDHyJoVOpuMDSHr4neiSF4HnpzXJXfMNb6oR007DxQQ,8426
research_os/tools/actions/state/reliability.py,sha256=aJ7sqX4F3oGCfwAmy7PfYgNnQnUwtNOYMeOFCvpfoOI,8103
research_os/tools/actions/state/repair.py,sha256=dP_nPzY9Ght4hrT_aFilyDTb8F5JbbQRj6RV2lnvWr4,6065
research_os/tools/actions/state/revision.py,sha256=f9pDIGT-jHA3rZEiOIOWMBATFs8ulHe2njhCqVrjhj0,8744
research_os/tools/actions/state/rigor_signals.py,sha256=FujKxNthngdQpYToVEG6DDRQL98yF5Qd6enW8arDVjA,11400
research_os/tools/actions/state/scratch.py,sha256=aJiMHSOX7XwZO7-u6QngEmvFdJBpXMkIXUFh2hnFLhA,5328
research_os/tools/actions/state/tier_state.py,sha256=eJ0kVlzoWC38mHgHEBzCAQCAM0SaIYvmVl-N6GezU40,5263
research_os/tools/actions/synthesis/__init__.py,sha256=cNkZVrFiYkgcIfsTG4eo0Xti1iLQv3hc8FReh6i3T0U,717
research_os/tools/actions/synthesis/citations.py,sha256=lie2010YtAtyH0ERn_0jD_k5E2gHBvAUizKVMh6u8xo,15732
research_os/tools/actions/synthesis/dashboard.py,sha256=7JefNjcgsFOUPL_w06vBzMxpJT99CmDSUBS0OWL1IEU,75785
research_os/tools/actions/synthesis/dashboard_app.py,sha256=FDyW6Hi5NqsHyivVx9D8F7abU22AXA2Qe3QSKaK-S2Q,58788
research_os/tools/actions/synthesis/dashboard_humanities.py,sha256=oDbgwphBXoMjguesnTGlRNyUybd7_2OQ7cgXhGlB4oU,19098
research_os/tools/actions/synthesis/dashboard_qualitative.py,sha256=uHoSRIo8b5lh7cRIdIzc1cdxVAF58WG-BpF0MKh7BWU,19471
research_os/tools/actions/synthesis/dashboard_story.py,sha256=dPDZV6CV3EEzhRW8kEinwCbIOFBHcOPIxLQPGPkrJDA,11999
research_os/tools/actions/synthesis/dashboard_v2.py,sha256=nA3dzw_39DlaQ1QTY4KfuJQkj_nq10j2zZW4LWHpJ8U,691
research_os/tools/actions/synthesis/dashboard_v2_humanities.py,sha256=PkLzH4rR09YM82o4rA4hnunzy6g_Op-vFQUmzyThEg4,314
research_os/tools/actions/synthesis/dashboard_v2_qualitative.py,sha256=HP6mlC4kSxZWj-fLOPgItNf_3wXpeb1VjW_vGnyoCJQ,317
research_os/tools/actions/synthesis/discussion_from_verdicts.py,sha256=Mg_kXZjylToWAcAdlW12UWOVAMK0L6JW4VeWNVFmWeg,9496
research_os/tools/actions/synthesis/drafter_loop.py,sha256=CA4LmCJqFoUQiBywQwy_H3V8gbmN5GcmRRpYHnETPxA,30515
research_os/tools/actions/synthesis/figure_auto_embed.py,sha256=V4PCrbHBcWX9tey3rdc3fSyXebeljDCvoROvrTbgImo,27161
research_os/tools/actions/synthesis/humanities_essay.py,sha256=159wTR8a23MAjN3KkZfhcF7dEA5tlP6sw2nxG_zKwqI,8991
research_os/tools/actions/synthesis/humanities_essay_scaffold.py,sha256=-Z6hd54CxzMltNi7BnOScl1qfCFGPrET_vsK32aE9to,178
research_os/tools/actions/synthesis/latex.py,sha256=J1BEVuLUZeYtbF0UjNEDFKgTbo2DTc9CWZojdUPuA8I,3720
research_os/tools/actions/synthesis/poster_typst.py,sha256=jfj6XY__uYX4WW1My9S31K-W6mTR43ediWPQOqEjwBI,25453
research_os/tools/actions/synthesis/preview.py,sha256=f8gxLcRm-hiiCiA1t9c73PZY_328dH1wicUDTkj-eg4,10693
research_os/tools/actions/synthesis/reviewer.py,sha256=iQHRf64qqrU-skSBkJqlD7ajkOebiSyB7oOhIguvlR4,30290
research_os/tools/actions/synthesis/slides.py,sha256=ZzLu8bnJ60gLxxkdsk9YYnaSGkdCPwhsr5Z7WzdlDKI,34798
research_os/tools/actions/synthesis/synthesize.py,sha256=FhgmzYxmadSZ4Rku2-CTTAJy3gYdY-JYjlldzyoyo5g,52316
research_os/tools/actions/synthesis/typst.py,sha256=i_zWdF_aOI-0RqZ34Gny9Lv6RqVj95kzIZuheIyemuo,24723
research_os/tools/actions/viz/__init__.py,sha256=4O0W_I1pSK--Q3bSgqWAPCglK9NseOoFzEmxAXXF1Jc,1513
research_os/tools/actions/viz/dashboard_tests.py,sha256=yPFjXX9jG6U4ta0HlM1I2uNRZphjVJXxPcSIv2HSk8M,19810
research_os/tools/actions/viz/figures.py,sha256=KQPHNshyti3iZQE6-HCKdfNxdzfpuEaLbWRERjMfzDY,16308
research_os/utils/__init__.py,sha256=MXZtQboX9-3L8UmA3vHV9R7fl2hAjXvxHNW_CRgzdmY,444
research_os/utils/asset_manager.py,sha256=DOmvDK8XdWBnj-MKaxIBq8A1Y5Bspj17W3JrYEjLrxQ,3503
research_os/utils/common.py,sha256=P3xgZnYwRhfSsVTQe-wfMD9LNoTd-jmic_1NKQahn08,3539
research_os_adapter_cytoscape/__init__.py,sha256=DupgcljN0fMR7YY4AWP-Z5QltC3VjlPOHOMAU280Re4,20359
research_os_adapter_nextflow/__init__.py,sha256=VJuX6DWGDF2GS0PzqJ3jgBvDEgAOiKOARvFIinvVwFw,18504
research_os_adapter_redcap/__init__.py,sha256=RUg5RnS4x2J95xJOkIfmoc8LA5z0_yEw4xeanX5E6UQ,24165
research_os_adapter_slurm/__init__.py,sha256=Clt4zQLb8wQHGHETng84gAoltXFAjdjflC_chAlgo6A,11326
research_os_adapter_snakemake/__init__.py,sha256=9LoHxJDRLCvdV8WVoen-08pha3utQQGWR5x8aA2QyDI,22396
research_os_adapter_synapse/__init__.py,sha256=rNFA45vmy6K6SaFoZzv8Y8lY0bLijcvl1CoukAZ_09A,14535
research_os_engineering/__init__.py,sha256=larZrJr4KA5locBy17aGFToz7sgKocEXTOzb_GMh_Qs,1847
research_os_engineering/detector.py,sha256=UfGmvH3ic7gx4ti8U4uBu7PuRZmgYvD_CSw9jcXR9zM,2796
research_os_engineering/router_entries.py,sha256=2VPG_eXvcHOxlngMWXFr01AF_x8smnoNCXpnfEkopu0,4996
research_os_engineering/tools.py,sha256=mfNuQQTXzPoHnkWiJq47zqKwFtA1OAn9PEcNjSECpQQ,10604
research_os_engineering/protocols/design/design_iteration.yaml,sha256=tPFZFpaJTQEEKWztg52yrop5R02WxvSnibWTsdL-Ko0,9400
research_os_engineering/protocols/design/requirements_traceability.yaml,sha256=Gnpsv42MDdCpVOIrejB3H93qsaVTslUmJkTzLKKS6lw,8281
research_os_engineering/protocols/output/engineering_report_structure.yaml,sha256=EVzeRBLn-TioUnm3To_XfL80FqzVBXy3nyi1W_jjPSM,11559
research_os_engineering/protocols/safety/fault_tree_analysis.yaml,sha256=7tuqq2sc0da9THd7cLjuqoG3knuJYC7JBqNq6qWaon4,9422
research_os_engineering/protocols/safety/fmea_protocol.yaml,sha256=Lh-jFYPpOczJWh9xFWfn6h6nTTB4rLkfcSGTLdmI3SU,4767
research_os_engineering/protocols/test/build_test_fix_loop.yaml,sha256=f3m2MN1yT4EEVGCd_72IXzvHgqPws4SZOJYJMzwK918,9474
research_os_engineering/protocols/test/test_failure_causation.yaml,sha256=tyo656EIuCl_K16tEXSjXnJVB4f3bP1_4po6GFVwBN0,9406
research_os_humanities/__init__.py,sha256=jDjz4HvI5sTsqzJCWZS2Z6vZWVYIoQUhUS-F6Xf-wKs,1433
research_os_humanities/detector.py,sha256=bL3rNf8nZ2XNeVArt7IBHgr2y4KN7b_t_yCP_Rvu7ps,4147
research_os_humanities/router_entries.py,sha256=6RGyRJxUvgpMML2UZw2-ALUMCYRYo94M0j_lez_hkM8,5898
research_os_humanities/tools.py,sha256=L4G2CP-3ome_7JeefK941GNaYeFaS0YdLVAglg8hl1E,11413
research_os_humanities/protocols/archival/archival_research.yaml,sha256=Voxn9Fa4RosuSf3w6x1K5yBjeuilNPLP04l6OwRkDG8,4851
research_os_humanities/protocols/archival/source_provenance.yaml,sha256=KXFkGT4ZPF_dL3epZXnxNPQOddKHCArDd-a7FIpY42Y,9798
research_os_humanities/protocols/citation/citation_chains.yaml,sha256=WdSJ17wy2ev3oU_23drn2noxGCqUbmDqt6ImJmJtdi8,9983
research_os_humanities/protocols/method/digital_humanities_workflow.yaml,sha256=BBK0M-RsmADKciE0fmUEc-ojn0jCwrAyLAcYfdylT5I,11391
research_os_humanities/protocols/method/hermeneutic_method.yaml,sha256=n5LFIcBc5qWLU8Xg7U3cAwtUKGHMC5iBX5-jZswR3D8,13756
research_os_humanities/protocols/output/scholarly_edition.yaml,sha256=vkKeZjQJKAbLc8NsB6UjqWja1S-_dBEi1KYtVJFztdU,12875
research_os_humanities/protocols/textual/close_reading.yaml,sha256=aKJaJ1Ipm3SJOlJ9DBadCY49JdXZQCE9bQ_i3L_qHvs,11354
research_os_humanities/protocols/textual/distant_reading.yaml,sha256=516P2Q-VM7ZuBFQMmqR2KY4kwtwts1Am4tj2tBCNiXc,12739
research_os_qualitative/__init__.py,sha256=QBNXWPbdtb-xleXiSg1l5IJXIvWvGYGofAU1QxuPZMo,1579
research_os_qualitative/detector.py,sha256=JlQcmPIlJdI7hScWiHVnyqs1uFjbd9rgput7G9Tllmg,3902
research_os_qualitative/router_entries.py,sha256=r40h7aWAaPE-X2AX8BCgMtm5z_aJ2F6z8EwsUVjvaY4,3717
research_os_qualitative/tools.py,sha256=zYmOxgxLay1sbM_xm7JGKtece1LlX7iwchGWHJbFpQ8,15155
research_os_qualitative/protocols/coding/coding_scheme_iteration.yaml,sha256=Ga4GSw3bNtp9VF517OmTKRhoT5V6b5bp1Zsap8-kRSs,5405
research_os_qualitative/protocols/method/grounded_theory_iteration.yaml,sha256=gS4UeTvWFCsjoUwf_svc0f-PqQkr8IpRD0EV-UJM6oY,10471
research_os_qualitative/protocols/method/thematic_analysis_braun_clarke.yaml,sha256=3LRC4niPQe4pQrOLkKhMzzs-QnfTaSPNITJZKHY4oUk,11641
research_os_qualitative/protocols/output/qualitative_report_format.yaml,sha256=QLB0jIlou_uQdVT906iJJXOPVoG2WhS4hjch1XFwVb8,8782
research_os_qualitative/protocols/validity/member_checking.yaml,sha256=TL-eQSoePbTi3l1_IxVE3fdkGLu9HUy6pWjGbDfWcwk,10540
research_os_theory_math/__init__.py,sha256=fVKk10WfV0vhlVRumZ3JL-4m_juYX2Le3rJRoyiI9KI,2002
research_os_theory_math/detector.py,sha256=UTK_MiCKjvfEkh3K_LSS-xaZeAIPz31gZnIgzagb7Rw,2706
research_os_theory_math/router_entries.py,sha256=MenfMTvkBcYbTF9N42K5G0El4-rjSzYGABsnHigcTgM,5383
research_os_theory_math/tools.py,sha256=jbbQVrrEWPDegIvrIythYK4SdyuJIl6bub11GKuUyJc,9153
research_os_theory_math/protocols/conjecture/conjecture_tracking.yaml,sha256=POBwsYC_sRDCJV-db3jCLOi__3vBJCrIMgTgF-iB36o,8292
research_os_theory_math/protocols/formal/coq_integration.yaml,sha256=01pT8mgJOUomUcY_DU3mHP5jXFBZPGHR75irRvWYJ8M,11884
research_os_theory_math/protocols/formal/lean_integration.yaml,sha256=jh86sUfQRyMQn7_hkErVbdkmRKEMlYpj1pKC2xc4A84,10467
research_os_theory_math/protocols/method/proof_strategy_selection.yaml,sha256=wCyA6hABEGZ862eGUULNdrbybafOSeLPPvS4M5ys0Us,11150
research_os_theory_math/protocols/output/theory_paper_structure.yaml,sha256=p6it6OiT99BD_grSQAPSaYwAKumZxqo7M7dp6pQo_4I,10645
research_os_theory_math/protocols/proof/lemma_library.yaml,sha256=MpClbMz3bpvuDM7BQDHaWbmW5TqdQpHHElCCJDdreNk,9704
research_os_theory_math/protocols/proof/proof_verification_workflow.yaml,sha256=TicV1pdstURKahhasr6IbAzOVit2QlWSQWJ5edP3wME,6980
research_os_theory_math/protocols/proof/theorem_dependency_graph.yaml,sha256=tqQL7xqhchgf0NOLl1tmkLKBy99AYkL_EGkMUguHZMg,9395
research_os_wet_lab/__init__.py,sha256=DCjVg1cxTvifgXTV3Bl2UEZBqv2k5eU5gpZSQnnmwaw,1248
research_os_wet_lab/detector.py,sha256=v1Rlz8RrT8alE_Hjtd3UEJBQq6VuLRc4PnseKeqavm4,2671
research_os_wet_lab/router_entries.py,sha256=kCptpXkerMdiBxQRKGcbVW2v8SamjirfRgSHp5R4foo,5633
research_os_wet_lab/tools.py,sha256=L8L6ZtkARIfmyPKoLUVaqTAcT5nbK0XQOECyq--xXqo,9579
research_os_wet_lab/protocols/audit/wet_lab_reproducibility_audit.yaml,sha256=DUpcFTQ0Q-hHlYvdGS-hxdfjgNYNw_StfioLwWxm_tw,12526
research_os_wet_lab/protocols/method/wet_lab_experiment_design.yaml,sha256=QEFEH91bBKYva0q3MbkVprhul26MIehw325BIJ8dvrY,12763
research_os_wet_lab/protocols/output/methods_section_wet_lab.yaml,sha256=OdXsfs7oqgWtVGZ8Xk9k5M1ciPPQPmmpndPRIMY8PoQ,13063
research_os_wet_lab/protocols/protocol/instrument_run_log.yaml,sha256=gDr2hJsjR9vus797P6zF66GXjJkAyDKb_Ty8joXk8tc,12484
research_os_wet_lab/protocols/protocol/plate_map_provenance.yaml,sha256=IzvtNrJvEX9UNnAg4_TqiHBh_EzdyfRRXUACvxipKB0,8801
research_os_wet_lab/protocols/protocol/reagent_lot_tracking.yaml,sha256=KwcO8fRorlaGu5wzGvsgB8Nogl9GVt8tPTeH0Jxk8wQ,4954
research_os_wet_lab/protocols/protocol/sample_lineage.yaml,sha256=aSlcGtsC3RYaDfe92Zkn07323qJTUtT6H6JDrdbfW1Q,8930
research_os_wet_lab/protocols/protocol/sop_versioning.yaml,sha256=ZVGRU0ro48o6iDDY2QNQWzwxdfvk9WnCVAZt-PL7Km8,10143
research_os-2.1.1.dist-info/METADATA,sha256=9NWevXAGBMOeMt6KgEgSRyDjwY6ZelzzaoEo27FC9WM,17858
research_os-2.1.1.dist-info/WHEEL,sha256=mffPy8wBnZQn2VnJUU5jE99KsxaSfiyMHV9Yt0aLVxs,87
research_os-2.1.1.dist-info/entry_points.txt,sha256=V53K8LMMjWE0DWWCgCV1NNSSwyvE4KOw_WUk1Gh5khw,53
research_os-2.1.1.dist-info/licenses/LICENSE,sha256=jZk-Vrw2ZjGlofDk9qAz92VX1lcssfz2V0iChNsZltY,1081
research_os-2.1.1.dist-info/RECORD,,
