Metadata-Version: 2.4
Name: happler-fm
Version: 0.1.0
Summary: A haplotype-based fine-mapping method
License-Expression: MIT
License-File: LICENSE
Author: Arya Massarat
Requires-Python: >=3.11
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Programming Language :: Python :: 3.15
Requires-Dist: click (>=8.0.4)
Requires-Dist: haptools (>=0.6.2)
Requires-Dist: jax (>=0.6.2)
Requires-Dist: networkx (>=2.6.3)
Requires-Dist: numpy (>=1.26)
Requires-Dist: pydot (>=1.4.2)
Requires-Dist: pysam (>=0.21.0)
Requires-Dist: scipy (>=1.12)
Requires-Dist: statsmodels (>=0.13.3)
Project-URL: Documentation, https://haptools.readthedocs.io
Project-URL: Homepage, https://github.com/gymrek-lab/happler
Project-URL: Repository, https://github.com/gymrek-lab/happler
Project-URL: changelog, https://github.com/gymrek-lab/happler/blob/main/CHANGELOG.md
Description-Content-Type: text/markdown

# happler
[![pypi version](https://img.shields.io/pypi/v/happler-fm)](https://pypi.org/project/happler-fm)
[![image](https://anaconda.org/bioconda/happler/badges/version.svg)](https://anaconda.org/bioconda/happler)
[![license](https://img.shields.io/pypi/l/happler-fm)](LICENSE)
![status](https://github.com/gymrek-lab/happler/workflows/Tests/badge.svg)
[<img src=https://github.com/codespaces/badge.svg width=160>](https://codespaces.new/gymrek-lab/happler)

Happler is a haplotype-based fine-mapping method that tests for associations between a trait and haplotypes (ie sets of correlated SNPs instead of individual SNPs).

Homepage: [https://happler.readthedocs.io/](https://happler.readthedocs.io/)

Visit our homepage for installation and usage instructions.

