README.md
pyproject.toml
pen_assemble/__init__.py
pen_assemble/_version.py
pen_assemble/api.py
pen_assemble/catalog.py
pen_assemble/cli.py
pen_assemble/codon.py
pen_assemble/pen_score.py
pen_assemble.egg-info/PKG-INFO
pen_assemble.egg-info/SOURCES.txt
pen_assemble.egg-info/dependency_links.txt
pen_assemble.egg-info/requires.txt
pen_assemble.egg-info/top_level.txt
pen_assemble/data/__init__.py
pen_assemble/data/loader.py
pen_assemble/strategies/__init__.py
pen_assemble/strategies/backbone_redesign.py
pen_assemble/strategies/deimmunization.py
pen_assemble/strategies/domain_swap.py
pen_assemble/strategies/ortholog_discovery.py
pen_assemble/triage/__init__.py
pen_assemble/triage/diversity.py
pen_assemble/triage/multi_gate.py
pen_assemble/utils/__init__.py
pen_assemble/utils/linker.py
pen_assemble/utils/mhc.py
pen_assemble/utils/pdb.py
pen_assemble/verification/__init__.py
pen_assemble/verification/active_site.py
pen_assemble/verification/mechclass.py
pen_assemble/verification/penscore.py
pen_assemble/verification/stability.py
pen_assemble/verification/structure.py
tests/test_catalog.py
tests/test_catalog_v052.py
tests/test_codon.py
tests/test_pen_score.py