fast-array-utils
matplotlib
numpy>=2
pandas<3
scipy
scikit-misc
anndata
scanpy
torch<2.8,>=2.2
h5py
numba
statsmodels
tqdm
umap-learn

[all]
piano-integration[loom,misc,rapids,scvi-tools,torch]

[loom]
loompy

[misc]
cirrocumulus
faiss-cpu
igraph
joblib
jupyterlab
leidenalg
memory_profiler
pot
pyro-ppl
pytest
seaborn
torch<2.8,>=2.2
umap-learn

[rapids]
torch<2.8,>=2.2
rapids-singlecell[rapids12]==0.13.1

[scvi-tools]
torch<2.8,>=2.2
jax[cuda12]
scvi-tools
chex<=0.1.91
scib-metrics==0.5.3

[torch]
torch<2.8,>=2.2
torchvision
torchaudio
