AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
README.rst
REVIEWER_GUIDE.md
pyproject.toml
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/reviewer_guide.rst
docs/usage.rst
src/Cell_GPS.egg-info/PKG-INFO
src/Cell_GPS.egg-info/SOURCES.txt
src/Cell_GPS.egg-info/dependency_links.txt
src/Cell_GPS.egg-info/entry_points.txt
src/Cell_GPS.egg-info/requires.txt
src/Cell_GPS.egg-info/top_level.txt
src/sfplot/__init__.py
src/sfplot/cli.py
src/sfplot/analysis/__init__.py
src/sfplot/analysis/binned_analysis.py
src/sfplot/analysis/binned_analysis_gpu.py
src/sfplot/analysis/compute_col_dendrogram_scores.py
src/sfplot/analysis/compute_cophenetic_distances_from_df_memory_opt.py
src/sfplot/analysis/ghost_searcher_with_findee.py
src/sfplot/analysis/searcher_findee_score.py
src/sfplot/analysis/split_utils.py
src/sfplot/analysis/tbc_analysis.py
src/sfplot/analysis/tbc_analysis_serial.py
src/sfplot/analysis/topology_extensions.py
src/sfplot/gui/__init__.py
src/sfplot/gui/gui_app.py
src/sfplot/plotting/__init__.py
src/sfplot/plotting/circle_heatmap.py
src/sfplot/plotting/circular_dendrogram.py
src/sfplot/plotting/plotting.py
src/sfplot/plotting/tcr_distance_heatmap.py
src/sfplot/preprocessing/__init__.py
src/sfplot/preprocessing/data_processing.py
src/sfplot/preprocessing/visium_preprocessing.py
src/sfplot/preprocessing/xenium_preprocessing.py
tests/__init__.py
tests/test_sfplot.py
tests/test_topology_extensions.py