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8.2. Fast atom neighbor lookup using a KD tree (implemented in C++) — MDAnalysis.KDTree.NeighborSearch

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9.1.1. 2D Streamplot

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9. Visualization modules

The MDAnalysis.visualization namespace contains code to carry out analyses which return data that is specifically-tailored for visualization.

Please see the individual module documentation for additional references and citation information.

These modules are not imported by default; in order to use them one has to import them from MDAnalysis.visualization, for instance:

import MDAnalysis.visualization.streamlines

Note

Some of the modules require additional Python packages such as numpy or matplotlib.

9.1. Visualization of Lipid Flow