If AME is of use to you in your research, please cite:
Robert McLeay and Timothy L. Bailey, "Motif Enrichment Analysis: A unified framework and method evaluation", BMC Bioinformatics, 11:165, 2010, doi:10.1186/1471-2105-11-165.
ame --oc ame_out --verbose 1 --fix-partition 2386 --bgformat 0 seqs-centered_w_bg databases/motif_databases/JASPAR_CORE_2009.meme
Warning: Not in partition maximisation mode. Fixing partition at 2386.
Threshold p-value for reporting results: 0.001
Motif p-values are corrected by #Motifs × #ThresholdsTested – (476 × 1 = 476)
motif number | scoring method | motif name | secondary motif name | scored sequences | p-value | corrected p-value |
---|---|---|---|---|---|---|
1. | Fisher-exact p-value of motif | MA0140.1 | Tal1::Gata1 | top 2386 seqs | 3.174e-233 | 1.511e-230 |
2. | Fisher-exact p-value of motif | MA0035.2 | Gata1 | top 2386 seqs | 1.176e-176 | 5.599e-174 |
3. | Fisher-exact p-value of motif | MA0300.1 | GAT1 | top 2386 seqs | 7.24e-105 | 3.446e-102 |
4. | Fisher-exact p-value of motif | MA0309.1 | GZF3 | top 2386 seqs | 2.572e-54 | 1.224e-51 |
5. | Fisher-exact p-value of motif | MA0289.1 | DAL80 | top 2386 seqs | 1.085e-27 | 5.166e-25 |
6. | Fisher-exact p-value of motif | MA0091.1 | TAL1::TCF3 | top 2386 seqs | 1.137e-22 | 5.413e-20 |
7. | Fisher-exact p-value of motif | MA0029.1 | Evi1 | top 2386 seqs | 1.124e-19 | 5.351e-17 |
8. | Fisher-exact p-value of motif | MA0039.2 | Klf4 | top 2386 seqs | 1.722e-17 | 8.197e-15 |
9. | Fisher-exact p-value of motif | MA0062.2 | GABPA | top 2386 seqs | 1.347e-16 | 6.41e-14 |
10. | Fisher-exact p-value of motif | MA0109.1 | Hltf | top 2386 seqs | 2.147e-15 | 1.022e-12 |
11. | Fisher-exact p-value of motif | MA0026.1 | Eip74EF | top 2386 seqs | 3.994e-14 | 1.901e-11 |
12. | Fisher-exact p-value of motif | MA0156.1 | FEV | top 2386 seqs | 4.156e-14 | 1.978e-11 |
13. | Fisher-exact p-value of motif | MA0136.1 | ELF5 | top 2386 seqs | 3.612e-13 | 1.72e-10 |
14. | Fisher-exact p-value of motif | MA0080.2 | SPI1 | top 2386 seqs | 3.964e-13 | 1.887e-10 |
15. | Fisher-exact p-value of motif | MA0450.1 | hkb | top 2386 seqs | 2.485e-11 | 1.183e-08 |
16. | Fisher-exact p-value of motif | MA0332.1 | MET28 | top 2386 seqs | 5.933e-11 | 2.824e-08 |
17. | Fisher-exact p-value of motif | MA0055.1 | Myf | top 2386 seqs | 1.29e-10 | 6.141e-08 |
18. | Fisher-exact p-value of motif | MA0002.2 | RUNX1 | top 2386 seqs | 7.4e-10 | 3.522e-07 |
19. | Fisher-exact p-value of motif | MA0048.1 | NHLH1 | top 2386 seqs | 1.527e-08 | 7.267e-06 |
20. | Fisher-exact p-value of motif | MA0034.1 | Gamyb | top 2386 seqs | 1.749e-08 | 8.325e-06 |
21. | Fisher-exact p-value of motif | MA0333.1 | MET31 | top 2386 seqs | 3.56e-08 | 1.695e-05 |
22. | Fisher-exact p-value of motif | MA0297.1 | FKH2 | top 2386 seqs | 7.475e-08 | 3.558e-05 |
23. | Fisher-exact p-value of motif | MA0062.1 | GABPA | top 2386 seqs | 1.202e-07 | 5.721e-05 |
24. | Fisher-exact p-value of motif | MA0334.1 | MET32 | top 2386 seqs | 1.497e-07 | 7.128e-05 |
25. | Fisher-exact p-value of motif | MA0443.1 | btd | top 2386 seqs | 8.013e-07 | 0.0003814 |
26. | Fisher-exact p-value of motif | MA0073.1 | RREB1 | top 2386 seqs | 1.914e-06 | 0.0009105 |