.gitignore
.pre-commit-config.yaml
CHANGELOG.md
CONTRIBUTING.md
CUPY_TROUBLESHOOTING_PLAN.md
FEATURE_DELIVERY_ANALYSIS.md
GIT_WORKFLOW.md
GPU_ACCELERATION_ANALYSIS.md
IMMEDIATE_ACTION_PLAN.md
Key Cancer-Related Cellular Pathways.md
MASTER_TODOS.md
Makefile
PERFORMANCE_TESTING_PLAN.md
README.md
SYSTEM_REQUIREMENTS_SIMPLIFIED.md
VERSION_STRATEGY.md
check_system_requirements.py
decide_gpu_approach.py
demo_qc_charts.py
example.py
exported_code.py
pyproject.toml
requirements-ci.txt
requirements.txt
run_performance_tests.py
setup.py
test_gpu_simple.py
test_heatmap.py
test_large_datasets_16gb.py
test_pysee.py
test_qc.py
.github/pull_request_template.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/config.yml
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/ci.yml
.github/workflows/release.yml
configs/datasets.yml
examples/cloud_deployment.py
examples/demo_qc_charts.py
examples/download_test_datasets.py
examples/gpu_vs_cpu_analysis.py
examples/memory_efficient_testing.py
examples/qc_interpretation_guide.py
examples/qc_panel_preview.py
examples/show_charts_info.py
pysee/__init__.py
pysee/cli/__init__.py
pysee/cli/main.py
pysee/core/__init__.py
pysee/core/dashboard.py
pysee/core/data.py
pysee/panels/__init__.py
pysee/panels/base.py
pysee/panels/heatmap.py
pysee/panels/qc.py
pysee/panels/umap.py
pysee/panels/violin.py
pysee/utils/system_requirements.py
pysee_bio.egg-info/PKG-INFO
pysee_bio.egg-info/SOURCES.txt
pysee_bio.egg-info/dependency_links.txt
pysee_bio.egg-info/entry_points.txt
pysee_bio.egg-info/requires.txt
pysee_bio.egg-info/top_level.txt
results/heatmap_panel_demo.html
results/qc_filtering_workflow.html
results/qc_panel_custom_thresholds.html
results/qc_panel_demo.html
results/qc_panel_multi_demo.html
results/umap_panel_demo.html
results/violin_panel_demo.html
tests/performance/__init__.py
tests/performance/run_performance_tests.py
tests/performance/test_memory_usage.py
tests/performance/test_rendering_performance.py
tests/performance/fixtures/dataset_fixtures.py
tests/performance/fixtures/dataset_registry.py
tests/performance/results/quick_test_20250904_230342.json
tests/performance/results/quick_test_20250904_231512.json
tests/performance/utils/performance_utils.py