PyBamView

Bam file: {{ BAM_FILES|join(',' ) }}
Reference: {{ REF_FILE }}
Region: {{ REGION }}
Samples: {% for sample in SAMPLES %} {{ sample }} {% endfor %}
{% for s in SAMPLES %} {% endfor %}
{% if TARGET_LIST|length > 0 %}
{% for f in BAM_FILES %} {% endfor %} {% for s in SAMPLES %} {% endfor %} Select target:
{% endif %}
{% for f in BAM_FILES %} {% endfor %} {% for s in SAMPLES %} {% endfor %} Enter region:
Selected:
{% for i in range(REFERENCE|length) %} {% if (REFERENCE[i]) == "N" or (REFERENCE[i]) == "n" %} {% else %} {% endif %} {% endfor %}
{{ REFERENCE[i] }} {{ REFERENCE[i] }}
{% for sample in SAMPLES %}
{{ sample }} (show/hide)
?
{% for aln in ALIGNMENTS[sample] %} {% for i in range(aln|length) %} {% if (aln[i]|upper) != (REFERENCE[i]|upper) and (REFERENCE[i]|upper|isnuc) and (aln[i]|upper|isnuc) %} {% endfor %} {% endfor %}
{% else %} {% endif %} {{ aln[i] }}

{% endfor %}