LICENSE
MANIFEST.in
README.md
pyproject.toml
src/brain/__init__.py
src/brain/__main__.py
src/brain/_optional.py
src/brain/_version.py
src/brain/alerts.py
src/brain/alerts_render.py
src/brain/alerts_staging.py
src/brain/anchor.py
src/brain/atomic_temp.py
src/brain/attestation.py
src/brain/audit.py
src/brain/audit_chain.py
src/brain/audit_drift.py
src/brain/autolink.py
src/brain/backup.py
src/brain/brief.py
src/brain/brief_render.py
src/brain/capture.py
src/brain/chunk.py
src/brain/classification.py
src/brain/cli.py
src/brain/cli_help.py
src/brain/cli_read_record.py
src/brain/cli_render.py
src/brain/config.py
src/brain/config_hostpaths.py
src/brain/connect.py
src/brain/context.py
src/brain/conventions.py
src/brain/conventions_scan.py
src/brain/cowork_leak_artifact.py
src/brain/cowork_leak_databases.py
src/brain/cowork_leak_notes.py
src/brain/cowork_leak_scan.py
src/brain/cowork_snapshot_guard.py
src/brain/cowork_staging.py
src/brain/dbretry.py
src/brain/deliverables_absorb.py
src/brain/deliverables_apply.py
src/brain/deliverables_ledger.py
src/brain/deliverables_materialize.py
src/brain/deliverables_previous.py
src/brain/deliverables_readme.py
src/brain/deliverables_shelf.py
src/brain/deliverables_sync.py
src/brain/doctor.py
src/brain/doctor_checks.py
src/brain/doctor_context.py
src/brain/doctor_desktop.py
src/brain/doctor_health.py
src/brain/doctor_mount_leak.py
src/brain/doctor_plugins.py
src/brain/doctor_staging.py
src/brain/doctor_vendor.py
src/brain/doctor_vm.py
src/brain/doctor_wiring.py
src/brain/draft_drain.py
src/brain/draft_update.py
src/brain/egress.py
src/brain/egress_terms.py
src/brain/embed.py
src/brain/embed_backends.py
src/brain/embed_catalog.py
src/brain/embed_onnx.py
src/brain/embed_qwen.py
src/brain/encryption.py
src/brain/exceptions_cli.py
src/brain/exceptions_page.py
src/brain/exceptions_render.py
src/brain/exceptions_tray.py
src/brain/exceptions_verify.py
src/brain/frontmatter.py
src/brain/golden_ops.py
src/brain/golden_probe.py
src/brain/golden_probe_cases.py
src/brain/graph.py
src/brain/graph_hygiene.py
src/brain/graph_ops.py
src/brain/graphify.py
src/brain/graphify_edges.py
src/brain/graphreport.py
src/brain/graphreport_sections.py
src/brain/graphreport_sections_2.py
src/brain/guard_settings.py
src/brain/healthreport.py
src/brain/healthreport_sections.py
src/brain/healthreport_unsigned.py
src/brain/inbox.py
src/brain/init.py
src/brain/init_import.py
src/brain/init_samples.py
src/brain/init_seed.py
src/brain/init_steps.py
src/brain/injection_fold.py
src/brain/injection_scan.py
src/brain/interview.py
src/brain/interview_apply.py
src/brain/interview_detect.py
src/brain/invariant_coverage.py
src/brain/invariant_crosstier.py
src/brain/invariant_deliverables.py
src/brain/invariant_floors.py
src/brain/invariant_ingest_guard.py
src/brain/invariant_lane_health.py
src/brain/invariant_reachability.py
src/brain/invariant_shared.py
src/brain/invariant_unsigned_notes.py
src/brain/invariants.py
src/brain/invariants_metrics.py
src/brain/language.py
src/brain/link_targets.py
src/brain/lock.py
src/brain/maintenance.py
src/brain/maintenance_escalation.py
src/brain/maintenance_folds.py
src/brain/maintenance_folds_2.py
src/brain/maintenance_folds_3.py
src/brain/maintenance_folds_4.py
src/brain/maintenance_golden.py
src/brain/maintenance_graphfolds.py
src/brain/maintenance_healthlog.py
src/brain/maintenance_hotmd.py
src/brain/maintenance_invariant_fields.py
src/brain/maintenance_notify.py
src/brain/maintenance_outcomes.py
src/brain/maintenance_recommendations.py
src/brain/maintenance_retention.py
src/brain/maintenance_sweep.py
src/brain/maintenance_watchdog.py
src/brain/mcp_adapter.py
src/brain/mcp_capture_verbs.py
src/brain/mcp_housekeeping_verbs.py
src/brain/mcp_mediation.py
src/brain/mcp_supersede_verbs.py
src/brain/mcp_verbs.py
src/brain/multihop.py
src/brain/notes.py
src/brain/originals_resolve.py
src/brain/overlay.py
src/brain/overlay_core.py
src/brain/overlay_generated.py
src/brain/overlay_keywords.py
src/brain/overlay_rules.py
src/brain/pathkey.py
src/brain/progress.py
src/brain/projection.py
src/brain/provenance.py
src/brain/provision.py
src/brain/provision_mcp.py
src/brain/provision_stage.py
src/brain/provision_wire.py
src/brain/querylog.py
src/brain/querylog_digest.py
src/brain/querylog_replay.py
src/brain/querylog_status.py
src/brain/read_log.py
src/brain/reexec.py
src/brain/remediation.py
src/brain/remediation_answers.py
src/brain/remediation_branches.py
src/brain/remediation_converged.py
src/brain/remediation_exceptions.py
src/brain/remediation_exceptions_store.py
src/brain/remediation_extract_retry.py
src/brain/remediation_folds.py
src/brain/remediation_questions.py
src/brain/remediation_routing.py
src/brain/remediation_schema.py
src/brain/remediation_state.py
src/brain/rerank.py
src/brain/rerank_onnx.py
src/brain/retrieval_ops.py
src/brain/retro.py
src/brain/session_hook.py
src/brain/session_hook_settings.py
src/brain/session_hook_spec.py
src/brain/snapshot.py
src/brain/status_ops.py
src/brain/supersede_declared.py
src/brain/sweepdirs.py
src/brain/update.py
src/brain/update_channels.py
src/brain/update_channels_2.py
src/brain/update_cos_guard.py
src/brain/update_model.py
src/brain/update_ops.py
src/brain/update_plugins.py
src/brain/update_state.py
src/brain/update_venv.py
src/brain/vectors.py
src/brain/versionlink.py
src/brain/versionlink_stages.py
src/brain/vm_ceiling.py
src/brain/vmstaging.py
src/brain/workspaces.py
src/brain/_assets/AGENTS.md
src/brain/_assets/assets/graph-explorer-template.html
src/brain/_assets/overlay/template/brand/brand-guide.md
src/brain/_assets/overlay/template/keywords/glossary.md
src/brain/_assets/overlay/template/people/roster.md
src/brain/_assets/overlay/template/voice/voice-profile.md
src/brain/_assets/routines/manifest.json
src/brain/_assets/scripts/brain-brief-mac.plist
src/brain/_assets/scripts/brain-brief.sh
src/brain/_assets/scripts/brain-synthesis-mac.plist
src/brain/_assets/scripts/brain-synthesis.sh
src/brain/_assets/scripts/brainiac-alerts.sh
src/brain/_assets/scripts/brainiac-egress-guard.sh
src/brain/_assets/scripts/install-brief-mac.sh
src/brain/_assets/scripts/install-brief-windows.ps1
src/brain/_assets/scripts/register_tasks.py
src/brain/_assets/scripts/vm-boundary-probe.sh
src/brain/_assets/scripts/vm-selftest.sh
src/brain/_assets/templates/company.md
src/brain/_assets/templates/concept.md
src/brain/_assets/templates/daily.md
src/brain/_assets/templates/decision.md
src/brain/_assets/templates/deliverable.md
src/brain/_assets/templates/meeting.md
src/brain/_assets/templates/person.md
src/brain/_assets/templates/project.md
src/brain/_assets/templates/state-moc.md
src/brain/cli_cmds/__init__.py
src/brain/cli_cmds/common_parser.py
src/brain/cli_cmds/connect.py
src/brain/cli_cmds/connect_parser.py
src/brain/cli_cmds/eval.py
src/brain/cli_cmds/eval_parser.py
src/brain/cli_cmds/index_storage.py
src/brain/cli_cmds/index_storage_parser.py
src/brain/cli_cmds/ingest_storage.py
src/brain/cli_cmds/ingest_storage_parser.py
src/brain/cli_cmds/lifecycle.py
src/brain/cli_cmds/lifecycle_parser.py
src/brain/cli_cmds/maintenance.py
src/brain/cli_cmds/maintenance_parser.py
src/brain/cli_cmds/navigation.py
src/brain/cli_cmds/navigation_parser.py
src/brain/cli_cmds/owner_workflow.py
src/brain/cli_cmds/owner_workflow_parser.py
src/brain/cli_cmds/presentation.py
src/brain/cli_cmds/presentation_parser.py
src/brain/cli_cmds/retrieval.py
src/brain/cli_cmds/retrieval_parser.py
src/brain/cli_cmds/update.py
src/brain/cli_cmds/update_parser.py
src/brain/cli_cmds/versioning.py
src/brain/cli_cmds/versioning_parser.py
src/brain/core/__init__.py
src/brain/core/_audit.py
src/brain/core/_briefing.py
src/brain/core/_capture.py
src/brain/core/_capture_staging.py
src/brain/core/_durability.py
src/brain/core/_health.py
src/brain/core/_maintenance.py
src/brain/core/_maintenance_state.py
src/brain/core/_retrieval.py
src/brain/core/_shared.py
src/brain/core/_supersede_batch.py
src/brain/core/_supersession.py
src/brain/core/_supersession_journal.py
src/brain/folds/__init__.py
src/brain/folds/context.py
src/brain/folds/daily.py
src/brain/folds/deliverables.py
src/brain/folds/golden.py
src/brain/folds/graph.py
src/brain/folds/intake.py
src/brain/folds/invariants.py
src/brain/folds/orchestrator.py
src/brain/folds/organization.py
src/brain/folds/preflight.py
src/brain/folds/publish.py
src/brain/folds/remediation.py
src/brain/folds/remediation_bookkeeping.py
src/brain/folds/reporting.py
src/brain/folds/retention.py
src/brain/folds/watchdogs.py
src/brain/folds/weekly.py
src/brain/index/__init__.py
src/brain/index/_connection.py
src/brain/index/_families.py
src/brain/index/_graph.py
src/brain/index/_identity.py
src/brain/index/_lifecycle.py
src/brain/index/_models.py
src/brain/index/_planning.py
src/brain/index/_records.py
src/brain/index/_retirement.py
src/brain/index/_schema.py
src/brain/index/_search.py
src/brain/index/_settings.py
src/brain/index/_shared.py
src/brain/index/_tools.py
src/brain/index/_zones.py
src/brain/index_stages/__init__.py
src/brain/index_stages/connection.py
src/brain/index_stages/diagnostics.py
src/brain/index_stages/duplicate_families.py
src/brain/index_stages/near_duplicates.py
src/brain/index_stages/rebuild.py
src/brain/index_stages/reranking.py
src/brain/index_stages/search.py
src/brain/index_stages/search_finalization.py
src/brain/index_stages/search_identity.py
src/brain/index_stages/search_ranking.py
src/brain/index_stages/sync.py
src/brain/ingest/__init__.py
src/brain/ingest/deliverables.py
src/brain/ingest/pipeline.py
src/brain/ingest/pipeline_duplicates.py
src/brain/ingest/pipeline_files.py
src/brain/ingest/pipeline_injection.py
src/brain/ingest/pipeline_nested.py
src/brain/ingest/pipeline_run.py
src/brain/ingest/pipeline_stages.py
src/brain/ingest/tierguard.py
src/brain/ingest/tierguard_verdict.py
src/brain/ingest/transcript.py
src/brain/ingest/handlers/__init__.py
src/brain/ingest/handlers/base.py
src/brain/ingest/handlers/concealment.py
src/brain/ingest/handlers/concealment_gate.py
src/brain/ingest/handlers/concealment_html.py
src/brain/ingest/handlers/concealment_ledger.py
src/brain/ingest/handlers/concealment_office.py
src/brain/ingest/handlers/concealment_pdf.py
src/brain/ingest/handlers/docx.py
src/brain/ingest/handlers/email.py
src/brain/ingest/handlers/html.py
src/brain/ingest/handlers/image.py
src/brain/ingest/handlers/pdf.py
src/brain/ingest/handlers/pptx.py
src/brain/ingest/handlers/tables.py
src/brain/ingest/handlers/text.py
src/brain/ingest/handlers/xlsx.py
src/brain/ingest/handlers/zip.py
src/brain/mcp_tools/__init__.py
src/brain/mcp_tools/capture.py
src/brain/mcp_tools/core_read.py
src/brain/mcp_tools/housekeeping.py
src/brain/mcp_tools/retrieval.py
src/brain/mcp_tools/supersession.py
src/brainiac_cli.egg-info/PKG-INFO
src/brainiac_cli.egg-info/SOURCES.txt
src/brainiac_cli.egg-info/dependency_links.txt
src/brainiac_cli.egg-info/entry_points.txt
src/brainiac_cli.egg-info/requires.txt
src/brainiac_cli.egg-info/top_level.txt