LICENSE
README.md
pyproject.toml
dmipy_fit/__init__.py
dmipy_fit/_gpu_config.py
dmipy_fit.egg-info/PKG-INFO
dmipy_fit.egg-info/SOURCES.txt
dmipy_fit.egg-info/dependency_links.txt
dmipy_fit.egg-info/requires.txt
dmipy_fit.egg-info/top_level.txt
dmipy_fit/audit/__init__.py
dmipy_fit/audit/biophysical_constants.py
dmipy_fit/audit/citations.py
dmipy_fit/audit/methods_section.py
dmipy_fit/audit/tests/__init__.py
dmipy_fit/audit/tests/test_citation_graph.py
dmipy_fit/core/__init__.py
dmipy_fit/core/acquisition_scheme.py
dmipy_fit/core/constants.py
dmipy_fit/core/fitted_modeling_framework.py
dmipy_fit/core/gradient_conversions.py
dmipy_fit/core/model_properties.py
dmipy_fit/core/modeling_framework.py
dmipy_fit/core/signal_model_properties.py
dmipy_fit/core/spherical_harmonics_framework.py
dmipy_fit/core/spherical_mean_framework.py
dmipy_fit/core/tests/__init__.py
dmipy_fit/core/tests/test_acquisition_scheme.py
dmipy_fit/core/tests/test_constants.py
dmipy_fit/core/tests/test_csd_equivalence_parametric_distributions.py
dmipy_fit/core/tests/test_fitted_model_properties.py
dmipy_fit/core/tests/test_gradient_conversions.py
dmipy_fit/core/tests/test_isolate_wm_signal.py
dmipy_fit/core/tests/test_mcm_s0_tissue_responses.py
dmipy_fit/core/tests/test_multi_tissue_models.py
dmipy_fit/core/tests/test_ogse_acquisition_scheme.py
dmipy_fit/core/tests/test_optimization.py
dmipy_fit/core/tests/test_parallel_processing.py
dmipy_fit/core/tests/test_physics_limiting_cases.py
dmipy_fit/core/tests/test_raises_multicompartment_input.py
dmipy_fit/core/tests/test_s0_global.py
dmipy_fit/core/tests/test_scientific_claims.py
dmipy_fit/core/tests/test_signal_model_properties.py
dmipy_fit/core/tests/test_sm_rician_physics.py
dmipy_fit/core/tests/test_spherical_mean_models.py
dmipy_fit/custom_optimizers/__init__.py
dmipy_fit/custom_optimizers/impulsed.py
dmipy_fit/custom_optimizers/intra_voxel_incoherent_motion.py
dmipy_fit/custom_optimizers/reference_models.py
dmipy_fit/custom_optimizers/single_shell_three_tissue_csd.py
dmipy_fit/custom_optimizers/tests/__init__.py
dmipy_fit/custom_optimizers/tests/test_reference_models_catalog.py
dmipy_fit/data/__init__.py
dmipy_fit/data/bingham_normalization_splinefit.npz
dmipy_fit/data/saved_acquisition_schemes.py
dmipy_fit/data/saved_data.py
dmipy_fit/data/gradient_tables/bvals_hcp_wu_minn.txt
dmipy_fit/data/gradient_tables/bvecs_hcp_wu_minn.txt
dmipy_fit/data/gradient_tables/camino_substrate_parameters_alexander2010.txt
dmipy_fit/data/gradient_tables/delta_Delta_hcp_wu_minn.txt
dmipy_fit/data/gradient_tables/schemefile_hcp_wu_minn.scheme1
dmipy_fit/data/gradient_tables/sphere_150.txt
dmipy_fit/data/gradient_tables/sphere_with_cap.txt
dmipy_fit/data/hcp_191841/NOTICE
dmipy_fit/data/hcp_191841/bvals_3T
dmipy_fit/data/hcp_191841/bvals_7T
dmipy_fit/data/hcp_191841/bvecs_3T
dmipy_fit/data/hcp_191841/bvecs_7T
dmipy_fit/data/hcp_191841/coronal_3T_mask.nii.gz
dmipy_fit/data/hcp_191841/coronal_7T_mask.nii.gz
dmipy_fit/data/hcp_191841/slice_metadata.json
dmipy_fit/data/hcp_191841/t1w_3T.nii.gz
dmipy_fit/data/hcp_191841/t1w_7T.nii.gz
dmipy_fit/data/mc_reference/README.md
dmipy_fit/data/mc_reference/crossterm.npz
dmipy_fit/data/mc_reference/parity_overlap.npz
dmipy_fit/data/mc_reference/surface_relaxivity.npz
dmipy_fit/data/mgh_1010/bvals.txt
dmipy_fit/data/mgh_1010/bvecs.txt
dmipy_fit/data/mgh_1010/delta_Delta.txt
dmipy_fit/data/sos_constraints/sh_constraint_0.csv
dmipy_fit/data/sos_constraints/sh_constraint_10.csv
dmipy_fit/data/sos_constraints/sh_constraint_2.csv
dmipy_fit/data/sos_constraints/sh_constraint_4.csv
dmipy_fit/data/sos_constraints/sh_constraint_6.csv
dmipy_fit/data/sos_constraints/sh_constraint_8.csv
dmipy_fit/data/spheres/01-shells-1.txt
dmipy_fit/data/spheres/01-shells-10.txt
dmipy_fit/data/spheres/01-shells-11.txt
dmipy_fit/data/spheres/01-shells-12.txt
dmipy_fit/data/spheres/01-shells-13.txt
dmipy_fit/data/spheres/01-shells-14.txt
dmipy_fit/data/spheres/01-shells-15.txt
dmipy_fit/data/spheres/01-shells-16.txt
dmipy_fit/data/spheres/01-shells-17.txt
dmipy_fit/data/spheres/01-shells-18.txt
dmipy_fit/data/spheres/01-shells-19.txt
dmipy_fit/data/spheres/01-shells-2.txt
dmipy_fit/data/spheres/01-shells-20.txt
dmipy_fit/data/spheres/01-shells-21.txt
dmipy_fit/data/spheres/01-shells-22.txt
dmipy_fit/data/spheres/01-shells-23.txt
dmipy_fit/data/spheres/01-shells-24.txt
dmipy_fit/data/spheres/01-shells-25.txt
dmipy_fit/data/spheres/01-shells-26.txt
dmipy_fit/data/spheres/01-shells-27.txt
dmipy_fit/data/spheres/01-shells-28.txt
dmipy_fit/data/spheres/01-shells-29.txt
dmipy_fit/data/spheres/01-shells-3.txt
dmipy_fit/data/spheres/01-shells-30.txt
dmipy_fit/data/spheres/01-shells-31.txt
dmipy_fit/data/spheres/01-shells-32.txt
dmipy_fit/data/spheres/01-shells-33.txt
dmipy_fit/data/spheres/01-shells-34.txt
dmipy_fit/data/spheres/01-shells-35.txt
dmipy_fit/data/spheres/01-shells-36.txt
dmipy_fit/data/spheres/01-shells-37.txt
dmipy_fit/data/spheres/01-shells-38.txt
dmipy_fit/data/spheres/01-shells-39.txt
dmipy_fit/data/spheres/01-shells-4.txt
dmipy_fit/data/spheres/01-shells-40.txt
dmipy_fit/data/spheres/01-shells-41.txt
dmipy_fit/data/spheres/01-shells-42.txt
dmipy_fit/data/spheres/01-shells-43.txt
dmipy_fit/data/spheres/01-shells-44.txt
dmipy_fit/data/spheres/01-shells-45.txt
dmipy_fit/data/spheres/01-shells-46.txt
dmipy_fit/data/spheres/01-shells-47.txt
dmipy_fit/data/spheres/01-shells-48.txt
dmipy_fit/data/spheres/01-shells-49.txt
dmipy_fit/data/spheres/01-shells-5.txt
dmipy_fit/data/spheres/01-shells-50.txt
dmipy_fit/data/spheres/01-shells-51.txt
dmipy_fit/data/spheres/01-shells-52.txt
dmipy_fit/data/spheres/01-shells-53.txt
dmipy_fit/data/spheres/01-shells-54.txt
dmipy_fit/data/spheres/01-shells-55.txt
dmipy_fit/data/spheres/01-shells-56.txt
dmipy_fit/data/spheres/01-shells-57.txt
dmipy_fit/data/spheres/01-shells-58.txt
dmipy_fit/data/spheres/01-shells-59.txt
dmipy_fit/data/spheres/01-shells-6.txt
dmipy_fit/data/spheres/01-shells-60.txt
dmipy_fit/data/spheres/01-shells-61.txt
dmipy_fit/data/spheres/01-shells-62.txt
dmipy_fit/data/spheres/01-shells-63.txt
dmipy_fit/data/spheres/01-shells-64.txt
dmipy_fit/data/spheres/01-shells-65.txt
dmipy_fit/data/spheres/01-shells-66.txt
dmipy_fit/data/spheres/01-shells-67.txt
dmipy_fit/data/spheres/01-shells-68.txt
dmipy_fit/data/spheres/01-shells-69.txt
dmipy_fit/data/spheres/01-shells-7.txt
dmipy_fit/data/spheres/01-shells-70.txt
dmipy_fit/data/spheres/01-shells-71.txt
dmipy_fit/data/spheres/01-shells-72.txt
dmipy_fit/data/spheres/01-shells-73.txt
dmipy_fit/data/spheres/01-shells-74.txt
dmipy_fit/data/spheres/01-shells-75.txt
dmipy_fit/data/spheres/01-shells-76.txt
dmipy_fit/data/spheres/01-shells-77.txt
dmipy_fit/data/spheres/01-shells-78.txt
dmipy_fit/data/spheres/01-shells-79.txt
dmipy_fit/data/spheres/01-shells-8.txt
dmipy_fit/data/spheres/01-shells-80.txt
dmipy_fit/data/spheres/01-shells-81.txt
dmipy_fit/data/spheres/01-shells-82.txt
dmipy_fit/data/spheres/01-shells-83.txt
dmipy_fit/data/spheres/01-shells-84.txt
dmipy_fit/data/spheres/01-shells-85.txt
dmipy_fit/data/spheres/01-shells-86.txt
dmipy_fit/data/spheres/01-shells-87.txt
dmipy_fit/data/spheres/01-shells-88.txt
dmipy_fit/data/spheres/01-shells-89.txt
dmipy_fit/data/spheres/01-shells-9.txt
dmipy_fit/data/spheres/01-shells-90.txt
dmipy_fit/data/tests/__init__.py
dmipy_fit/data/tests/test_saved_data.py
dmipy_fit/distributions/__init__.py
dmipy_fit/distributions/distribute_models.py
dmipy_fit/distributions/distributions.py
dmipy_fit/distributions/tests/__init__.py
dmipy_fit/distributions/tests/test_bingham.py
dmipy_fit/distributions/tests/test_distribute_models.py
dmipy_fit/distributions/tests/test_distributed_model_raises.py
dmipy_fit/distributions/tests/test_watson.py
dmipy_fit/jax/__init__.py
dmipy_fit/jax/attenuation_jax.py
dmipy_fit/jax/brute_jax.py
dmipy_fit/jax/convergence.py
dmipy_fit/jax/csd_jax.py
dmipy_fit/jax/distributed_models_jax.py
dmipy_fit/jax/dti_jax.py
dmipy_fit/jax/exchange_models_jax.py
dmipy_fit/jax/fractions_jax.py
dmipy_fit/jax/jax_compat.py
dmipy_fit/jax/losses_jax.py
dmipy_fit/jax/multicompartment_jax.py
dmipy_fit/jax/optimizers_jax.py
dmipy_fit/jax/signal_models_jax.py
dmipy_fit/jax/vmap_fit.py
dmipy_fit/jax/tests/__init__.py
dmipy_fit/jax/tests/test_csd_eta.py
dmipy_fit/jax/tests/test_csd_jax.py
dmipy_fit/jax/tests/test_distributed_models_jax.py
dmipy_fit/jax/tests/test_fittable_sigma.py
dmipy_fit/jax/tests/test_fittable_sigma_sm.py
dmipy_fit/jax/tests/test_fractions_jax.py
dmipy_fit/jax/tests/test_gpu_smoke.py
dmipy_fit/jax/tests/test_jax_compat.py
dmipy_fit/jax/tests/test_occupancy_gated_jax.py
dmipy_fit/jax/tests/test_ogse_sphere_jax.py
dmipy_fit/jax/tests/test_phase1_signal_models.py
dmipy_fit/jax/tests/test_phase2_multicompartment.py
dmipy_fit/jax/tests/test_phase3_fitting.py
dmipy_fit/jax/tests/test_phase4_vmap.py
dmipy_fit/jax/tests/test_phase5_complex_models.py
dmipy_fit/jax/tests/test_plane_dot_jax.py
dmipy_fit/jax/tests/test_s0_jax.py
dmipy_fit/jax/tests/test_spherical_mean_jax.py
dmipy_fit/jax/tests/test_vmap_fixed_param_dot.py
dmipy_fit/jax/tests/test_vmap_weights.py
dmipy_fit/optimizers/__init__.py
dmipy_fit/optimizers/brute2fine.py
dmipy_fit/optimizers/mix.py
dmipy_fit/optimizers/multi_tissue_volume_fraction.py
dmipy_fit/optimizers/tests/__init__.py
dmipy_fit/optimizers_fod/__init__.py
dmipy_fit/optimizers_fod/csd_cvxpy.py
dmipy_fit/optimizers_fod/csd_plus.py
dmipy_fit/optimizers_fod/csd_tournier.py
dmipy_fit/signal_models/__init__.py
dmipy_fit/signal_models/attenuation.py
dmipy_fit/signal_models/capped_cylinder_models.py
dmipy_fit/signal_models/cylinder_models.py
dmipy_fit/signal_models/exchange_models.py
dmipy_fit/signal_models/gaussian_models.py
dmipy_fit/signal_models/plane_models.py
dmipy_fit/signal_models/sphere_models.py
dmipy_fit/signal_models/tissue_response_models.py
dmipy_fit/signal_models/tests/__init__.py
dmipy_fit/signal_models/tests/test_callaghan.py
dmipy_fit/signal_models/tests/test_cylinder_fixture_gamma_lm.py
dmipy_fit/signal_models/tests/test_cylinder_fixture_ogse_dispersed.py
dmipy_fit/signal_models/tests/test_cylinder_fixtures.py
dmipy_fit/signal_models/tests/test_dot_and_ball.py
dmipy_fit/signal_models/tests/test_gamma_lm_cylinder.py
dmipy_fit/signal_models/tests/test_gaussian_phase.py
dmipy_fit/signal_models/tests/test_impulsed_model.py
dmipy_fit/signal_models/tests/test_ogse_cylinder_models.py
dmipy_fit/signal_models/tests/test_ogse_sphere_models.py
dmipy_fit/signal_models/tests/test_sh_dispersion.py
dmipy_fit/signal_models/tests/test_soderman.py
dmipy_fit/signal_models/tests/test_stick.py
dmipy_fit/signal_models/tests/test_zeppelin.py
dmipy_fit/tissue_response/__init__.py
dmipy_fit/tissue_response/three_tissue_response.py
dmipy_fit/tissue_response/white_matter_response.py
dmipy_fit/tissue_response/tests/__init__.py
dmipy_fit/tissue_response/tests/test_three_tissue_response.py
dmipy_fit/tissue_response/tests/test_tissue_response_csd.py
dmipy_fit/tissue_response/tests/test_tissue_response_models.py
dmipy_fit/tissue_response/tests/test_tournier_wm_response.py
dmipy_fit/utils/__init__.py
dmipy_fit/utils/construct_observation_matrix.py
dmipy_fit/utils/sh_analytical.py
dmipy_fit/utils/spherical_convolution.py
dmipy_fit/utils/spherical_mean.py
dmipy_fit/utils/utils.py
dmipy_fit/utils/tests/__init__.py
dmipy_fit/utils/tests/test_analytical_sh.py
dmipy_fit/utils/tests/test_constructions_observation_matrix.py
dmipy_fit/utils/tests/test_coordinate_transformations.py
dmipy_fit/utils/tests/test_spherical_convolution.py
dmipy_fit/utils/tests/test_spherical_mean.py
dmipy_fit/utils/tests/test_tortuosity_multi_tissue.py
dmipy_fit/white_matter/__init__.py
dmipy_fit/white_matter/composition.py
dmipy_fit/white_matter/mwf.py
dmipy_fit/white_matter/surface.py
dmipy_fit/white_matter/tests/__init__.py
dmipy_fit/white_matter/tests/test_composition.py
dmipy_fit/white_matter/tests/test_mwf.py
dmipy_fit/white_matter/tests/test_surface.py
tests/test_dti_jax.py