LICENSE
README.md
pyproject.toml
src/alphajudge/__init__.py
src/alphajudge/cli.py
src/alphajudge/complex.py
src/alphajudge/confidence.py
src/alphajudge/core.py
src/alphajudge/docking_scores.py
src/alphajudge/geometry.py
src/alphajudge/interface.py
src/alphajudge/runner.py
src/alphajudge.egg-info/PKG-INFO
src/alphajudge.egg-info/SOURCES.txt
src/alphajudge.egg-info/dependency_links.txt
src/alphajudge.egg-info/entry_points.txt
src/alphajudge.egg-info/requires.txt
src/alphajudge.egg-info/top_level.txt
src/alphajudge/biophysics/__init__.py
src/alphajudge/biophysics/bonds.py
src/alphajudge/biophysics/connolly.py
src/alphajudge/biophysics/pisa_molref.py
src/alphajudge/biophysics/prosurf.py
src/alphajudge/biophysics/sc.py
src/alphajudge/biophysics/scoring.py
src/alphajudge/biophysics/solvation.py
src/alphajudge/biophysics/srs_chemistry.py
src/alphajudge/parsers/__init__.py
src/alphajudge/parsers/af2.py
src/alphajudge/parsers/af3.py
test/test_biophysics.py
test/test_ccp4_biophysics_reference.py
test/test_parsers_and_runner.py