Integron_finder API Reference
- annotation
- attc
- config
Config
Config.__init__()
Config.__weakref__
Config.default_topology
Config.func_annot_path
Config.input_dir
Config.input_seq_path
Config.log_level
Config.model_attc_name
Config.model_attc_path
Config.model_dir
Config.model_integrase
Config.model_len
Config.model_phage_int
Config.outdir
Config.result_dir
Config.tmp_dir()
- hmm
- infernal
- integrase
- integron
- prot_db
GembaseDB
GembaseDB.__getitem__()
GembaseDB.__init__()
GembaseDB.__iter__()
GembaseDB._make_protfile()
GembaseDB._parse_lst()
GembaseDB.find_gembase_file_basename()
GembaseDB.gembase1_complete_parser()
GembaseDB.gembase1_draft_parser()
GembaseDB.gembase2_parser()
GembaseDB.gembase_sniffer()
GembaseDB.get_description()
GembaseDB.get_lst_dir()
GembaseDB.get_replicon_type()
ProdigalDB
ProteinDB
SeqDesc
- results
- topology
- utils