.gitignore
LICENSE.txt
README.md
pyproject.toml
tox.ini
.github/dependabot.yml
.github/workflows/publish_to_pypi.yaml
.github/workflows/tests.yaml
src/libtcrlm/__init__.py
src/libtcrlm/bert.py
src/libtcrlm/config_reader.py
src/libtcrlm/mlm_token_prediction_projector.py
src/libtcrlm/self_attention_stack.py
src/libtcrlm/vector_representation_delegate.py
src/libtcrlm.egg-info/PKG-INFO
src/libtcrlm.egg-info/SOURCES.txt
src/libtcrlm.egg-info/dependency_links.txt
src/libtcrlm.egg-info/requires.txt
src/libtcrlm.egg-info/top_level.txt
src/libtcrlm/schema/__init__.py
src/libtcrlm/schema/amino_acid.py
src/libtcrlm/schema/df_manipulation.py
src/libtcrlm/schema/exception.py
src/libtcrlm/schema/pmhc.py
src/libtcrlm/schema/tcr.py
src/libtcrlm/schema/tcr_pmhc_pair.py
src/libtcrlm/token_embedder/__init__.py
src/libtcrlm/token_embedder/blosum_embedding.py
src/libtcrlm/token_embedder/cdr3_embedder.py
src/libtcrlm/token_embedder/cdr_embedder.py
src/libtcrlm/token_embedder/one_hot_token_index_embedding.py
src/libtcrlm/token_embedder/simple_relative_position_embedding.py
src/libtcrlm/token_embedder/sin_position_embedding.py
src/libtcrlm/token_embedder/token_embedder.py
src/libtcrlm/tokeniser/__init__.py
src/libtcrlm/tokeniser/cdr3_tokeniser.py
src/libtcrlm/tokeniser/cdr_tokeniser.py
src/libtcrlm/tokeniser/token_indices.py
src/libtcrlm/tokeniser/tokeniser.py
tests/conftest.py
tests/test_bert.py
tests/test_sin_position_embedding.py
tests/test_token_embedders.py
tests/test_tokenisers.py
tests/resources/bad_cdr3b.csv
tests/resources/bad_trav.csv
tests/resources/mock_data.csv
tests/test_schema/test_df_manipulation.py
tests/test_schema/test_pmhc.py
tests/test_schema/test_tcr.py
tests/test_self_attention_stack/test_self_attention_stack_with_builtins.py
tests/test_self_attention_stack/test_self_attention_stack_with_initial_projection.py
tests/test_vector_representation_delegate/test_average_pool_vector_representation_delegate.py
tests/test_vector_representation_delegate/test_cls_vector_representation_delegate.py