| gemlib/__init__.py |
(no function) |
6 |
0 |
0 |
100% |
| gemlib/deterministic/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| gemlib/deterministic/ode_model.py |
_total_flux |
4 |
0 |
0 |
100% |
| gemlib/deterministic/ode_model.py |
ode_model |
18 |
6 |
0 |
67% |
| gemlib/deterministic/ode_model.py |
ode_model.derivs |
4 |
0 |
0 |
100% |
| gemlib/deterministic/ode_model.py |
(no function) |
17 |
0 |
0 |
100% |
| gemlib/distributions/__init__.py |
(no function) |
3 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianMotion.__init__ |
8 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._batch_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._event_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._sample_n |
1 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._log_prob |
3 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianBridge.__init__ |
9 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._batch_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._event_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._sample_n |
6 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._log_prob |
4 |
0 |
0 |
100% |
| gemlib/distributions/brownian.py |
(no function) |
19 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
_one_hot_expand_state |
3 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
_total_flux |
4 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
compute_state |
16 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
exponential_propogate |
3 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
exponential_propogate.propogate_fn |
9 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
continuous_markov_simulation |
10 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
continuous_markov_simulation.cond |
4 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
continuous_markov_simulation.body |
5 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
continuous_time_log_likelihood |
11 |
0 |
0 |
100% |
| gemlib/distributions/continuous_markov.py |
(no function) |
22 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.__init__ |
7 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.transition_rate_fn |
1 |
1 |
0 |
0% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.incidence_matrix |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.initial_state |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.num_steps |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.initial_time |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.compute_state |
1 |
1 |
0 |
0% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._sample_n |
5 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._sample_n.one_sample |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._log_prob |
7 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._log_prob.one_log_prob |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._event_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._batch_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
(no function) |
32 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
_scatter_to_transition_matrix |
5 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
_approx_expm |
10 |
1 |
0 |
90% |
| gemlib/distributions/discrete_markov.py |
make_transition_prob_matrix_fn |
3 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
make_transition_prob_matrix_fn.fn |
4 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
_multinomial_log_prob |
4 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
_multinomial_log_prob_fwd |
4 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
_multinomial_log_prob_bwd |
5 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
compute_state |
8 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
chain_binomial_propagate |
2 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
chain_binomial_propagate.propagate_fn |
16 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
discrete_markov_simulation |
9 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
discrete_markov_simulation.scan_fn |
4 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
discrete_markov_log_prob |
12 |
0 |
0 |
100% |
| gemlib/distributions/discrete_markov.py |
(no function) |
21 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.__init__ |
6 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.transition_rate_fn |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.incidence_matrix |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.initial_state |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.initial_step |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.source_states |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.time_delta |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.num_steps |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.num_units |
1 |
1 |
0 |
0% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.num_states |
1 |
1 |
0 |
0% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._batch_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._event_shape |
2 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.compute_state |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.transition_prob_matrix |
5 |
1 |
0 |
80% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._sample_n |
6 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._sample_n.one_sample |
2 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._log_prob |
6 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._log_prob.one_log_prob |
1 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
_compute_source_states |
3 |
0 |
0 |
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
(no function) |
42 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
_log_factorial |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
_log_choose |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.__init__ |
11 |
2 |
0 |
82% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._parameter_properties |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._param_shapes |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._params_event_ndims |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.N |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.K |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.n |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._default_event_space_bijector |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._event_shape_tensor |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._event_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._sample_n |
3 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._log_prob |
3 |
3 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._mode |
1 |
1 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._mean |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._variance |
4 |
4 |
0 |
0% |
| gemlib/distributions/hypergeometric.py |
(no function) |
31 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric_sampler.py |
sample_hypergeometric |
32 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric_sampler.py |
sample_hypergeometric._log_hypergeometric_coeff |
1 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric_sampler.py |
sample_hypergeometric.generate_and_test_samples |
9 |
0 |
0 |
100% |
| gemlib/distributions/hypergeometric_sampler.py |
(no function) |
9 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
_log_choose |
1 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical.__init__ |
6 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._parameter_properties |
1 |
1 |
0 |
0% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical.k |
1 |
1 |
0 |
0% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical.mask |
1 |
1 |
0 |
0% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._batch_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._event_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._sample_n |
5 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._log_prob |
2 |
0 |
0 |
100% |
| gemlib/distributions/kcategorical.py |
(no function) |
18 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.__init__ |
8 |
1 |
0 |
88% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._parameter_properties |
1 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.low |
1 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.high |
1 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.float_dtype |
1 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._event_shape_tensor |
1 |
1 |
0 |
0% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._event_shape |
1 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._sample_n |
6 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._prob |
4 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._log_prob |
1 |
0 |
0 |
100% |
| gemlib/distributions/uniform_integer.py |
(no function) |
20 |
0 |
0 |
100% |
| gemlib/func_util.py |
_check_deprecated |
2 |
0 |
0 |
100% |
| gemlib/func_util.py |
_check_deprecated.dep_fn |
4 |
0 |
0 |
100% |
| gemlib/func_util.py |
maybe_combine_fn |
4 |
0 |
0 |
100% |
| gemlib/func_util.py |
maybe_combine_fn.fn_combined |
1 |
0 |
0 |
100% |
| gemlib/func_util.py |
(no function) |
4 |
0 |
0 |
100% |
| gemlib/math.py |
cumsum |
9 |
0 |
0 |
100% |
| gemlib/math.py |
cumsum_np |
11 |
1 |
0 |
91% |
| gemlib/math.py |
multiply_no_nan |
2 |
0 |
0 |
100% |
| gemlib/math.py |
(no function) |
7 |
0 |
0 |
100% |
| gemlib/mcmc/__init__.py |
(no function) |
13 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
make_initial_running_variance |
4 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
make_initial_running_variance.fn |
1 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc |
6 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc._build_kernel |
5 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc.init_fn |
4 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc.step_fn |
11 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_hmc.py |
(no function) |
16 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
adaptive_rwmh |
3 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
adaptive_rwmh.init_fn |
13 |
2 |
0 |
85% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
adaptive_rwmh.step_fn |
25 |
0 |
0 |
100% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
(no function) |
27 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/__init__.py |
(no function) |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/fixtures.py |
sir_metapop_example |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/fixtures.py |
(no function) |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
_update_state |
7 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
_reverse_update |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.__init__ |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.target_log_prob_fn |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.transition_index |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.incidence_matrix |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.max_timepoint |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.max_events |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.name |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.parameters |
1 |
1 |
0 |
0% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.is_calibrated |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.one_step |
13 |
1 |
0 |
92% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.bootstrap_results |
6 |
1 |
0 |
83% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
(no function) |
40 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
_get_state_tuple |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
_repack_state_tuple |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh |
6 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh._build_kernel |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh.init_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh.step_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
(no function) |
25 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
_mask_max |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal |
11 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.unit |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.timepoint |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.direction |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.num_events |
8 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.num_events.pull_from_past |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.num_events.push_to_past |
6 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
(no function) |
11 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events._build_kernel |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events.init_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events.step_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
(no function) |
18 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
events_state_count_bounding_fn |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
events_state_count_bounding_fn.fn |
11 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_is_within |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_timepoint_selector |
3 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_delta_selector |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_make_event_count_selector |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_make_event_count_selector.fn |
3 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
discrete_move_events_proposal |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
discrete_move_events_proposal.proposal |
11 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_apply_move |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_reverse_move |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.__init__ |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.target_log_prob_fn |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.incidence_matrix |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.initial_conditions |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.target_transition_id |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.num_units |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.delta_max |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.count_max |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.name |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.parameters |
1 |
1 |
0 |
0% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.is_calibrated |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate._proposal |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.one_step |
16 |
3 |
0 |
81% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.bootstrap_results |
6 |
2 |
0 |
67% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
(no function) |
55 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
_is_row_nonzero |
1 |
1 |
0 |
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
_maybe_expand_dims |
1 |
1 |
0 |
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
_add_events |
2 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.__init__ |
3 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.target_log_prob_fn |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.incidence_matrix |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.target_transition_id |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.initial_conditions |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.count_max |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.t_range |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.name |
1 |
1 |
0 |
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.parameters |
1 |
1 |
0 |
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.is_calibrated |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.one_step |
16 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.one_step.add_occult_fn |
10 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.one_step.del_occult_fn |
10 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.bootstrap_results |
6 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
(no function) |
49 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh._build_kernel |
1 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh.init_fn |
7 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh.step_fn |
7 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
(no function) |
21 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
_slice_min |
3 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
add_occult_proposal |
6 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
add_occult_proposal.proposal |
5 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
del_occult_proposal |
4 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
del_occult_proposal.proposal |
13 |
0 |
0 |
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
(no function) |
10 |
0 |
0 |
100% |
| gemlib/mcmc/hmc.py |
hmc |
5 |
0 |
0 |
100% |
| gemlib/mcmc/hmc.py |
hmc._make_momentum_distribution |
3 |
1 |
0 |
67% |
| gemlib/mcmc/hmc.py |
hmc._build_kernel |
1 |
0 |
0 |
100% |
| gemlib/mcmc/hmc.py |
hmc.init_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/hmc.py |
hmc.step_fn |
7 |
0 |
0 |
100% |
| gemlib/mcmc/hmc.py |
(no function) |
14 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_sampler.py |
_split_seed |
1 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_sampler.py |
_scan |
1 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_sampler.py |
mcmc |
7 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_sampler.py |
mcmc.one_step |
2 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_sampler.py |
(no function) |
11 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_util.py |
is_list_like |
1 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_util.py |
get_flattening_bijector |
5 |
0 |
0 |
100% |
| gemlib/mcmc/mcmc_util.py |
(no function) |
5 |
0 |
0 |
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan |
3 |
0 |
0 |
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.init_fn |
2 |
0 |
0 |
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.step_fn |
8 |
0 |
0 |
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.step_fn.body |
3 |
0 |
0 |
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.step_fn.cond |
2 |
0 |
0 |
100% |
| gemlib/mcmc/multi_scan.py |
(no function) |
10 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
as_list |
3 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
_make_target_type |
3 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
_make_position_projector |
3 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
_make_position_projector.fn |
7 |
1 |
0 |
86% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__ |
7 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__._name_target |
1 |
1 |
0 |
0% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.init |
5 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.init.conditional_tlp |
2 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.step |
8 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.step.conditional_tlp |
2 |
0 |
0 |
100% |
| gemlib/mcmc/mwg_step.py |
(no function) |
13 |
0 |
0 |
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh |
4 |
0 |
0 |
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh._build_kernel |
1 |
0 |
0 |
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh.init_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh.step_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/random_walk_metropolis.py |
(no function) |
11 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
_maybe_flatten |
5 |
5 |
0 |
0% |
| gemlib/mcmc/sampling_algorithm.py |
_squeeze |
3 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
_maybe_list |
3 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
_maybe_tuple |
3 |
3 |
0 |
0% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.__init__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.__call__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.then |
3 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.then.compound_init_fn |
3 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.__rshift__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.__init__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.__call__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.then |
3 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.then.compound_step_kernel |
7 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.__rshift__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__init__ |
5 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.init |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.step |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.then |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__rshift__ |
1 |
0 |
0 |
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__mul__ |
1 |
1 |
0 |
0% |
| gemlib/mcmc/sampling_algorithm.py |
(no function) |
42 |
0 |
0 |
100% |
| gemlib/mcmc/test_util.py |
counting_kernel |
3 |
0 |
0 |
100% |
| gemlib/mcmc/test_util.py |
counting_kernel.init_fn |
3 |
0 |
0 |
100% |
| gemlib/mcmc/test_util.py |
counting_kernel.step_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/test_util.py |
(no function) |
8 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
map_structure |
5 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
map_structure.is_leaf |
1 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
_transform_tlp_fn |
4 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
_transform_tlp_fn.fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
transform_sampling_algorithm |
3 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
transform_sampling_algorithm.init_fn |
5 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
transform_sampling_algorithm.step_fn |
10 |
0 |
0 |
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
(no function) |
8 |
0 |
0 |
100% |
| gemlib/prng_util.py |
sanitize_key |
5 |
1 |
0 |
80% |
| gemlib/prng_util.py |
(no function) |
3 |
0 |
0 |
100% |
| gemlib/spatial/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| gemlib/spatial/sp_dist.py |
pdist |
3 |
0 |
0 |
100% |
| gemlib/spatial/sp_dist.py |
include_all |
2 |
2 |
0 |
0% |
| gemlib/spatial/sp_dist.py |
_pdist_indices_mask |
7 |
0 |
0 |
100% |
| gemlib/spatial/sp_dist.py |
compress_distance |
2 |
0 |
0 |
100% |
| gemlib/spatial/sp_dist.py |
sparse_pdist |
14 |
1 |
1 |
93% |
| gemlib/spatial/sp_dist.py |
(no function) |
18 |
0 |
0 |
100% |
| gemlib/tensor_util.py |
broadcast_together |
6 |
0 |
0 |
100% |
| gemlib/tensor_util.py |
broadcast_fn_to |
2 |
0 |
0 |
100% |
| gemlib/tensor_util.py |
broadcast_fn_to.wrapped |
4 |
1 |
0 |
75% |
| gemlib/tensor_util.py |
(no function) |
5 |
0 |
0 |
100% |
| gemlib/util.py |
batch_gather |
9 |
0 |
0 |
100% |
| gemlib/util.py |
transition_coords |
3 |
0 |
0 |
100% |
| gemlib/util.py |
transition_coords_tuple |
1 |
0 |
0 |
100% |
| gemlib/util.py |
states_from_transition_idx |
2 |
0 |
0 |
100% |
| gemlib/util.py |
(no function) |
9 |
0 |
0 |
100% |