.gitignore
CLONE.md
CONTRIBUTING.md
LICENSE
README.md
pyproject.toml
requirements-mps.txt
requirements.txt
.github/ISSUE_TEMPLATE
.github/workflows/clone.yml
.github/workflows/python-publish.yml
biomed_multi_view.egg-info/PKG-INFO
biomed_multi_view.egg-info/SOURCES.txt
biomed_multi_view.egg-info/dependency_links.txt
biomed_multi_view.egg-info/entry_points.txt
biomed_multi_view.egg-info/requires.txt
biomed_multi_view.egg-info/top_level.txt
bmfm_sm/__init__.py
bmfm_sm/api/__init__.py
bmfm_sm/api/dataset_registry.py
bmfm_sm/api/model_registry.py
bmfm_sm/api/smmv_api.py
bmfm_sm/api/smmv_assessment.py
bmfm_sm/api/smmv_pretrained_model.py
bmfm_sm/api/tests/__init__.py
bmfm_sm/api/tests/test_smmv_api.py
bmfm_sm/core/__init__.py
bmfm_sm/core/data_modules/__init__.py
bmfm_sm/core/data_modules/base_data_module.py
bmfm_sm/core/data_modules/base_datasets.py
bmfm_sm/core/data_modules/namespace.py
bmfm_sm/core/data_modules/samplers.py
bmfm_sm/core/data_modules/splits.py
bmfm_sm/core/data_modules/fuse_ops/__init__.py
bmfm_sm/core/data_modules/fuse_ops/ops_general.py
bmfm_sm/core/data_modules/fuse_ops/ops_graphs.py
bmfm_sm/core/data_modules/fuse_ops/ops_images.py
bmfm_sm/core/data_modules/fuse_ops/ops_ligand_target.py
bmfm_sm/core/data_modules/fuse_ops/ops_smiles.py
bmfm_sm/core/data_modules/fuse_ops/text_tokenizer.py
bmfm_sm/core/modules/__init__.py
bmfm_sm/core/modules/base_pretrained_model.py
bmfm_sm/core/modules/callbacks.py
bmfm_sm/core/tests/__init__.py
bmfm_sm/core/tests/test_core_data_modules_fuse_ops.py
bmfm_sm/launch/download_molecule_net_data.py
bmfm_sm/launch/run_finetune.py
bmfm_sm/predictive/__init__.py
bmfm_sm/predictive/data_modules/__init__.py
bmfm_sm/predictive/data_modules/graph_finetune_dataset.py
bmfm_sm/predictive/data_modules/image_finetune_dataset.py
bmfm_sm/predictive/data_modules/ligand_target_finetune_dataset.py
bmfm_sm/predictive/data_modules/mpp_finetune_dataset.py
bmfm_sm/predictive/data_modules/multimodal_finetune_dataset.py
bmfm_sm/predictive/data_modules/text_finetune_dataset.py
bmfm_sm/predictive/modules/__init__.py
bmfm_sm/predictive/modules/finetune_ligand_target_lightning_module.py
bmfm_sm/predictive/modules/finetune_lightning_module.py
bmfm_sm/predictive/modules/graph_2d_models.py
bmfm_sm/predictive/modules/image_models.py
bmfm_sm/predictive/modules/prediction_heads.py
bmfm_sm/predictive/modules/smmv_model.py
bmfm_sm/predictive/modules/text_models.py
bmfm_sm/predictive/tests/__init__.py
bmfm_sm/predictive/tests/test_predictive_data_modules_graph_finetune_dataset.py
bmfm_sm/predictive/tests/test_predictive_data_modules_image_finetune.py
bmfm_sm/predictive/tests/test_predictive_data_modules_multimodal_finetune.py
bmfm_sm/predictive/tests/test_predictive_modules_finetune.py
bmfm_sm/predictive/tests/test-data/checkpoints/AttentiveFP_model.ckpt
bmfm_sm/predictive/tests/test-data/checkpoints/GCN_model.ckpt
bmfm_sm/predictive/tests/test-data/checkpoints/GIN_model.ckpt
bmfm_sm/predictive/tests/test-data/checkpoints/TrimNet_model.ckpt
bmfm_sm/predictive/tests/test-data/finetune/data_test.csv
bmfm_sm/predictive/tests/test-data/finetune/data_train.csv
bmfm_sm/predictive/tests/test-data/finetune/data_val.csv
bmfm_sm/resources/dataset_registry.yaml
bmfm_sm/resources/finetuned_ckpts.yaml
bmfm_sm/resources/modelcard_template.md
bmfm_sm/resources/predictive_assessment_tanimoto_dist.csv
bmfm_sm/resources/pretrained_ckpts.yaml
bmfm_sm/resources/vocab.txt
bmfm_sm/tests/all_tests.py
docs/overview.png
notebooks/smmv_api_demo.ipynb