Metadata-Version: 2.4
Name: prepmagma
Version: 0.2
Summary: prepare data for running magma from unorganized gwas data
Project-URL: Homepage, https://github.com/brainfo/cleanmagma
Project-URL: Issues, https://github.com/brainfo/cleanmagma/issues
Author-email: brainfo <scilavisher@gmail.com>
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.8
Description-Content-Type: text/markdown

# cleanmagma

- [x] To retrieve the information from GWAS summary statistics file for running magma.
- [x] To run magma with snp to gene annotation, gene level and gene set level enrichment.
- [x] To summarize the results for the same input gmt files (named gene list) enriched to multiple GWAS data and plot a heatmap with rows are given input gmt names and columns are different GWAS file names.

See examples in docs/
