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.gitattributes
.gitignore
.pylintrc
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.zenodo.json
CHANGELOG.rst
CODE_OF_CONDUCT.rst
CONTRIBUTING.rst
Jenkinsfile
LICENSE.txt
MANIFEST.in
Makefile
README.rst
pyproject.toml
python_versions.json
setup.py
tox.ini
.github/CODEOWNERS
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.github/workflows/deploy.yml
docs/Makefile
docs/nitpick-exceptions
docs/source/conf.py
docs/source/glossary.rst
docs/source/index.rst
docs/source/_static/style.css
docs/source/_templates/layout.html
docs/source/api_reference/index.rst
docs/source/api_reference/utilities.rst
docs/source/api_reference/causal_factor/calibration_constant.rst
docs/source/api_reference/causal_factor/distributions.rst
docs/source/api_reference/causal_factor/effect.rst
docs/source/api_reference/causal_factor/exposure.rst
docs/source/api_reference/causal_factor/index.rst
docs/source/api_reference/causal_factor/utilities.rst
docs/source/api_reference/disease/exceptions.rst
docs/source/api_reference/disease/index.rst
docs/source/api_reference/disease/model.rst
docs/source/api_reference/disease/models.rst
docs/source/api_reference/disease/special_disease.rst
docs/source/api_reference/disease/state.rst
docs/source/api_reference/disease/transition.rst
docs/source/api_reference/plugins/index.rst
docs/source/api_reference/plugins/parser.rst
docs/source/api_reference/population/add_new_birth_cohorts.rst
docs/source/api_reference/population/base_population.rst
docs/source/api_reference/population/data_transformations.rst
docs/source/api_reference/population/index.rst
docs/source/api_reference/population/mortality.rst
docs/source/api_reference/results/disability.rst
docs/source/api_reference/results/disease.rst
docs/source/api_reference/results/index.rst
docs/source/api_reference/results/mortality.rst
docs/source/api_reference/results/observer.rst
docs/source/api_reference/results/risk.rst
docs/source/api_reference/results/simple_cause.rst
docs/source/api_reference/results/stratification.rst
docs/source/api_reference/risks/base_risk.rst
docs/source/api_reference/risks/effect.rst
docs/source/api_reference/risks/index.rst
docs/source/api_reference/risks/implementations/index.rst
docs/source/api_reference/risks/implementations/low_birth_weight_and_short_gestation.rst
docs/source/api_reference/treatment/index.rst
docs/source/api_reference/treatment/intervention.rst
docs/source/api_reference/treatment/magic_wand.rst
docs/source/api_reference/treatment/scale_up.rst
docs/source/api_reference/treatment/therapeutic_inertia.rst
docs/source/concepts/index.rst
docs/source/concepts/disease/index.rst
docs/source/concepts/disease/model.rst
docs/source/concepts/disease/risk_attributable_disease.rst
docs/source/concepts/population/base_population.rst
docs/source/concepts/population/fertility.rst
docs/source/concepts/population/index.rst
docs/source/concepts/population/mortality.rst
docs/source/concepts/results/index.rst
docs/source/concepts/results/public_health_observer.rst
docs/source/concepts/results/stratification.rst
docs/source/concepts/risk/calibration_constant.rst
docs/source/concepts/risk/distributions.rst
docs/source/concepts/risk/exposure.rst
docs/source/concepts/risk/index.rst
docs/source/concepts/risk/relative_risk.rst
docs/source/concepts/treatment/index.rst
docs/source/concepts/treatment/scale_up.rst
docs/source/concepts/treatment/therapeutic_inertia.rst
docs/source/tutorials/disease.rst
docs/source/tutorials/index.rst
docs/source/tutorials/non_standard_risk.rst
docs/source/tutorials/population.rst
docs/source/tutorials/risk.rst
docs/source/tutorials/risk_effect.rst
src/vivarium_public_health/__about__.py
src/vivarium_public_health/__init__.py
src/vivarium_public_health/_example_data.py
src/vivarium_public_health/_version.py
src/vivarium_public_health/utilities.py
src/vivarium_public_health.egg-info/PKG-INFO
src/vivarium_public_health.egg-info/SOURCES.txt
src/vivarium_public_health.egg-info/dependency_links.txt
src/vivarium_public_health.egg-info/not-zip-safe
src/vivarium_public_health.egg-info/requires.txt
src/vivarium_public_health.egg-info/top_level.txt
src/vivarium_public_health/causal_factor/__init__.py
src/vivarium_public_health/causal_factor/calibration_constant.py
src/vivarium_public_health/causal_factor/distributions.py
src/vivarium_public_health/causal_factor/effect.py
src/vivarium_public_health/causal_factor/exposure.py
src/vivarium_public_health/causal_factor/utilities.py
src/vivarium_public_health/disease/__init__.py
src/vivarium_public_health/disease/exceptions.py
src/vivarium_public_health/disease/model.py
src/vivarium_public_health/disease/models.py
src/vivarium_public_health/disease/special_disease.py
src/vivarium_public_health/disease/state.py
src/vivarium_public_health/disease/transition.py
src/vivarium_public_health/plugins/__init__.py
src/vivarium_public_health/plugins/parser.py
src/vivarium_public_health/population/__init__.py
src/vivarium_public_health/population/add_new_birth_cohorts.py
src/vivarium_public_health/population/base_population.py
src/vivarium_public_health/population/data_transformations.py
src/vivarium_public_health/population/mortality.py
src/vivarium_public_health/results/__init__.py
src/vivarium_public_health/results/causal_factor.py
src/vivarium_public_health/results/columns.py
src/vivarium_public_health/results/disability.py
src/vivarium_public_health/results/disease.py
src/vivarium_public_health/results/mortality.py
src/vivarium_public_health/results/observer.py
src/vivarium_public_health/results/simple_cause.py
src/vivarium_public_health/results/stratification.py
src/vivarium_public_health/risks/__init__.py
src/vivarium_public_health/risks/base_risk.py
src/vivarium_public_health/risks/effect.py
src/vivarium_public_health/risks/implementations/__init__.py
src/vivarium_public_health/risks/implementations/low_birth_weight_and_short_gestation.py
src/vivarium_public_health/treatment/__init__.py
src/vivarium_public_health/treatment/intervention.py
src/vivarium_public_health/treatment/magic_wand.py
src/vivarium_public_health/treatment/scale_up.py
src/vivarium_public_health/treatment/therapeutic_inertia.py
tests/__init__.py
tests/conftest.py
tests/mock_artifact.py
tests/test_utilities.py
tests/causal_factor/__init__.py
tests/causal_factor/test_calibration_constant.py
tests/data/rr_interpolator.csv
tests/disease/__init__.py
tests/disease/test_disease.py
tests/disease/test_special_disease.py
tests/plugins/__init__.py
tests/plugins/test_parser.py
tests/population/__init__.py
tests/population/conftest.py
tests/population/test_add_new_birth_cohort.py
tests/population/test_base_population.py
tests/population/test_data_transformations.py
tests/population/test_mortality.py
tests/results/__init__.py
tests/results/test_categorical_risk_observer.py
tests/results/test_disability.py
tests/results/test_disability_observer.py
tests/results/test_disease_observer.py
tests/results/test_mortality_observer.py
tests/results/test_stratification.py
tests/risks/__init__.py
tests/risks/conftest.py
tests/risks/test_base_risk.py
tests/risks/test_distributions.py
tests/risks/test_effect.py
tests/risks/test_low_birth_weight_and_short_gestation.py
tests/treatment/__init__.py
tests/treatment/test_intervention.py
tests/treatment/test_scale_up.py