# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
.pybuilder/
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
#   For a library or package, you might want to ignore these files since the code is
#   intended to run in multiple environments; otherwise, check them in:
# .python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# UV
#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
#   This is especially recommended for binary packages to ensure reproducibility, and is more
#   commonly ignored for libraries.
#uv.lock

# poetry
#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
#   This is especially recommended for binary packages to ensure reproducibility, and is more
#   commonly ignored for libraries.
#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
#poetry.lock

# pdm
#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
#pdm.lock
#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
#   in version control.
#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
.pdm.toml
.pdm-python
.pdm-build/

# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.opifex.env
.env.local
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# PyCharm
#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
#  and can be added to the global gitignore or merged into this file.  For a more nuclear
#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/

# Abstra
# Abstra is an AI-powered process automation framework.
# Ignore directories containing user credentials, local state, and settings.
# Learn more at https://abstra.io/docs
.abstra/

# Visual Studio Code
#  Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore
#  that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
#  and can be added to the global gitignore or merged into this file. However, if you prefer,
#  you could uncomment the following to ignore the enitre vscode folder
# .vscode/

# Ruff stuff:
.ruff_cache/

# PyPI configuration file
.pypirc

# AI-powered code editors
#  Cursor is an AI-powered code editor. `.cursorignore` specifies files/directories to
#  exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
#  refer to https://docs.cursor.com/context/ignore-files
.cursor/
.cursorignore
.cursorindexingignore
.copilot/
.anthropic/

# Claude Code editor
.claude/

# Scientific Computing & ML Artifacts
# ====================================

# JAX compilation cache
jax_cache/

# Example output directories
examples_output/
.jax_cache/

# Checkpoints and model artifacts
checkpoints/
checkpoint_*/
*.checkpoint
*.ckpt
*.orbax-checkpoint*
*.orbax-tmp*

# Scientific data formats
*.hdf5
*.h5
*.nc
*.netcdf
*.vtk
*.vtu
*.vtp
*.xdmf
*.xml

# Serialized models and data
*.pkl
*.pickle
*.joblib
*.npy
*.npz

# Experiment outputs
experiments/
runs/
logs/
outputs/
results/
wandb/
tensorboard/
mlruns/

# Temporary computation files
*.tmp
*.temp
*_temp/
*_tmp/

# Benchmark and profiling outputs
*.prof
*.profile
benchmark_results/
pdebench_results/


# Test and temporary comparison directories
test_comparison*/
*test_comparison*/
test_benchmark*/
test_results/

# Generated scripts
scripts/activate_sciml.sh

# Cache directories
cache/
.cache/
tmp/
temp/
.tmp/

# Platform-specific optimizations
*.fasl
*.dfsl
*.cfsl
*.d64fsl
*.p64fsl
*.lx64fsl
*.lx32fsl
*.dx64fsl
*.dx32fsl
*.fx64fsl
*.fx32fsl
*.sx64fsl
*.sx32fsl
*.wx64fsl
*.wx32fsl

# GPU-specific files
*.cubin
*.fatbin
*.ptx

# Generated files
autom4te.cache/
*.x
*.i*86
*.x86_64
*.hex

# Statistical/numerical computation artifacts
*.npy
*.npz
*.mat
*.csv
*.tsv
*.json.gz
*.pickle.gz

# LaTeX files for documentation
*.aux
*.bbl
*.blg
*.fdb_latexmk
*.fls
*.lof
*.log
*.lot
*.out
*.toc
*.synctex.gz
*.nav
*.snm
*.vrb

# VS Code workspace files
*.code-workspace

# OS generated files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# IDE files
*.swp
*.swo
*~

# Backup files
*.bak
*.backup
*.old

# Documentation build artifacts
_build/
.doctrees/

# Profiling and benchmark data
*.prof
*.perf
*.memprof

# Coverage reports
htmlcov/
.coverage
.coverage.*
coverage.xml
*.cover

# Configuration files (if they contain secrets)
config.ini
config.cfg
secrets.yaml
credentials.json

# Local development files
.local/
local/

# Editor temporary files
#*#
.#*

# macOS
.DS_Store
.AppleDouble
.LSOverride

# Windows
Thumbs.db
Thumbs.db:encryptable
ehthumbs.db
ehthumbs_vista.db
*.stackdump
[Dd]esktop.ini
$RECYCLE.BIN/
*.cab
*.msi
*.msix
*.msm
*.msp
*.lnk

# Linux
*~
.fuse_hidden*
.directory
.Trash-*
.nfs*

# Temporary files
*.tmp
*.bak
*.swp
*~.nib
*.lock
!uv.lock

# Development environments
.env.local
.env.development.local
.env.test.local
.env.production.local

# Database files
*.db
*.sqlite
*.sqlite3

# Generated API documentation
api_docs/

# Compiled files
*.exe
*.dll
*.pdb
*.lib
*.exp

# Archive files
*.tar
*.zip
*.7z
*.rar
*.gz
*.bz2
*.xz

# Node.js (if any JavaScript tooling is used)
node_modules/
npm-debug.log*
yarn-debug.log*
yarn-error.log*

# Python virtual environments
bin/
include/
pyvenv.cfg

# Jupyter notebook output files
*.ipynb_checkpoints/

# Documentation sources
*.rst~
*.md~

# prompts
prompt*
AGENTS.md
CLAUDE.md
copilot-instructions.md
.github/copilot-instructions.md
CHANGELOG.md
custom_modes/
documents/
example_data/

# Internal development and memory bank files
memory-bank/
COMPREHENSIVE_REPOSITORY_AUDIT_*.md
DOCUMENTATION_*.md
*_REFACTORING_PLAN.md
*_SUMMARY.md

# Internal documentation and style guides (should not be in public docs nav)
docs/GPU_TESTING_SOLUTION.md
docs/STYLE_GUIDE.md
docs/development-setup.md
docs/development/breaking-changes.md
docs/development/nnx-migration.md


# Deployment infrastructure (auto-generated scaffolding)
/deployment/

# Benchmark output data and one-off scripts
benchmark-data/
benchmarks/
docs/deployment/DEPLOYMENT_SUMMARY.md

bandit-report.json
sandbox/
# One-off config stubs
/config/
