LICENSE
MANIFEST.in
README.md
setup.py
celescope/__init__.py
celescope/celescope.py
celescope/chemistry_dict.py
celescope/data/__init__.py
celescope/data/Clindex/tag_barcode.fasta
celescope/data/Clindex/tag_linker.fasta
celescope/data/HLA/hla_reference_rna.fasta
celescope/data/chemistry/__init__.py
celescope/data/chemistry/5p3p-1/bc1.txt
celescope/data/chemistry/5p3p-1/bc2.txt
celescope/data/chemistry/5p3p-1/bc3.txt
celescope/data/chemistry/5p3p-2/bc1.txt
celescope/data/chemistry/5p3p-2/bc2.txt
celescope/data/chemistry/5p3p-2/bc3.txt
celescope/data/chemistry/5p3p-3/bc1.txt
celescope/data/chemistry/5p3p-3/bc2.txt
celescope/data/chemistry/5p3p-3/bc3.txt
celescope/data/chemistry/GEXSCOPE-V1/bc.txt
celescope/data/chemistry/GEXSCOPE-V1/linker1.txt
celescope/data/chemistry/GEXSCOPE-V1/linker2.txt
celescope/data/chemistry/GEXSCOPE-V2/bc1.txt
celescope/data/chemistry/GEXSCOPE-V2/bc2.txt
celescope/data/chemistry/GEXSCOPE-V2/bc3.txt
celescope/data/chemistry/GEXSCOPE-V2/linker1.txt
celescope/data/chemistry/GEXSCOPE-V2/linker2.txt
celescope/data/chemistry/GEXSCOPE-V3/bc1.txt
celescope/data/chemistry/GEXSCOPE-V3/bc2.txt
celescope/data/chemistry/GEXSCOPE-V3/bc3.txt
celescope/data/chemistry/GEXSCOPE-V3/linker1.txt
celescope/data/chemistry/GEXSCOPE-V3/linker2.txt
celescope/data/chemistry/bulk_rna-V1/bc.txt
celescope/data/chemistry/bulk_rna-V2/bc.txt
celescope/data/chemistry/bulk_rna-bulk_vdj_match/bc.txt
celescope/data/chemistry/bulk_vdj/bc.txt
celescope/data/chemistry/bulk_vdj/linker.txt
celescope/data/chemistry/flv/bc.txt
celescope/data/chemistry/flv/linker
celescope/data/chemistry/flv_rna/bc.txt
celescope/data/chemistry/flv_rna/linker_4types
celescope/data/chemistry/flv_rna-V2/bc1.txt
celescope/data/chemistry/flv_rna-V2/bc2.txt
celescope/data/chemistry/flv_rna-V2/bc3.txt
celescope/data/chemistry/flv_rna-V2/linker1.txt
celescope/data/chemistry/flv_rna-V2/linker2.txt
celescope/data/chemistry/flv_rna-V2/linker3.txt
celescope/data/fusion/blood_1/BCR_ABL1_PML_RARA_all.fasta
celescope/data/fusion/blood_1/BCR_ABL1_PML_RARA_all_pos.txt
celescope/data/fusion/blood_1/mkref.sh
celescope/data/rRNA/human_ribo.fasta
celescope/data/snp/panel/CHIP.bed
celescope/data/snp/panel/blood_1.bed
celescope/data/snp/panel/lung_1.bed
celescope/data/sweetseq/sweetseq_barcode.fasta
celescope/data/sweetseq/sweetseq_linker.fasta
celescope/rna/__init__.py
celescope/rna/analysis.py
celescope/rna/mkref.py
celescope/rna/multi_rna.py
celescope/rna/star.py
celescope/rnavirus/__init__.py
celescope/rnavirus/convert.py
celescope/rnavirus/kb_python.py
celescope/rnavirus/multi_rnavirus.py
celescope/templates/css/bootstrap.min.css
celescope/templates/css/buttons.dataTables.min.css
celescope/templates/css/dataTables.jqueryui.min.css
celescope/templates/css/jquery-ui-git.css
celescope/templates/css/jquery-ui.css
celescope/templates/css/jquery.dataTables.css
celescope/templates/css/fontello-323401c3/config.json
celescope/templates/css/fontello-323401c3/css/animation.css
celescope/templates/css/fontello-323401c3/css/fontello-codes.css
celescope/templates/css/fontello-323401c3/css/fontello-embedded.css
celescope/templates/css/fontello-323401c3/css/fontello-ie7-codes.css
celescope/templates/css/fontello-323401c3/css/fontello-ie7.css
celescope/templates/css/fontello-323401c3/css/fontello.css
celescope/templates/css/fontello-323401c3/font/fontello.eot
celescope/templates/css/fontello-323401c3/font/fontello.svg
celescope/templates/css/fontello-323401c3/font/fontello.ttf
celescope/templates/css/fontello-323401c3/font/fontello.woff
celescope/templates/css/fontello-323401c3/font/fontello.woff2
celescope/templates/html/bulk_rna/base.html
celescope/templates/html/bulk_rna/cells.html
celescope/templates/html/bulk_vdj/base.html
celescope/templates/html/bulk_vdj/count_vdj.html
celescope/templates/html/capture_rna/base.html
celescope/templates/html/capture_rna/count_capture_rna_summary.html
celescope/templates/html/capture_virus/analysis_virus.html
celescope/templates/html/capture_virus/base.html
celescope/templates/html/citeseq/analysis_cite.html
celescope/templates/html/citeseq/base.html
celescope/templates/html/common/img1.html
celescope/templates/html/common/logo.html
celescope/templates/html/dynaseq/base.html
celescope/templates/html/dynaseq/conversion.html
celescope/templates/html/dynaseq/replacement.html
celescope/templates/html/dynaseq/substitution.html
celescope/templates/html/flv_trust4/annotation.html
celescope/templates/html/flv_trust4/base.html
celescope/templates/html/flv_trust4/summarize.html
celescope/templates/html/fusion/analysis_fusion.html
celescope/templates/html/fusion/base.html
celescope/templates/html/hla/base.html
celescope/templates/html/mut/base.html
celescope/templates/html/pathseq/analysis_pathseq.html
celescope/templates/html/pathseq/base.html
celescope/templates/html/rna/analysis.html
celescope/templates/html/rna/base.html
celescope/templates/html/rna/count.html
celescope/templates/html/rna/star.html
celescope/templates/html/rna_5p3p/base.html
celescope/templates/html/rna_virus/analysis_rna_virus_summary.html
celescope/templates/html/rna_virus/base.html
celescope/templates/html/rnavirus/base.html
celescope/templates/html/rnavirus/rnavirus.html
celescope/templates/html/snp/analysis_snp.html
celescope/templates/html/snp/base.html
celescope/templates/html/sweetseq/analysis_tag.html
celescope/templates/html/sweetseq/base.html
celescope/templates/html/tag/analysis_tag.html
celescope/templates/html/tag/base.html
celescope/templates/html/tcr_fl/analysis_tag_summary.html
celescope/templates/html/tcr_fl/base.html
celescope/templates/html/tcr_fl/count_tag_summary.html
celescope/templates/html/tcr_fl/mapping_tag_summary.html
celescope/templates/html/utils/analysis.html
celescope/templates/html/utils/col1_metrics.html
celescope/templates/html/utils/col2_metrics.html
celescope/templates/html/utils/end.html
celescope/templates/html/utils/head.html
celescope/templates/html/utils/help_info.html
celescope/templates/html/utils/preprocessing.html
celescope/templates/html/utils/start.html
celescope/templates/html/utils/step.html
celescope/templates/html/utils/table_dict.html
celescope/templates/html/utils/table_script/bulk_rna.html
celescope/templates/html/utils/table_script/bulk_vdj.html
celescope/templates/html/utils/table_script/dynaseq.html
celescope/templates/html/utils/table_script/pathseq.html
celescope/templates/html/utils/table_script/rna.html
celescope/templates/html/utils/table_script/rnavirus.html
celescope/templates/html/utils/table_script/snp.html
celescope/templates/html/utils/table_script/vdj.html
celescope/templates/html/vdj/base.html
celescope/templates/html/vdj/count_vdj.html
celescope/templates/img/img1.png
celescope/templates/img/logo2.png
celescope/templates/js/bootstrap.min.js
celescope/templates/js/buttons.flash.min.js
celescope/templates/js/buttons.html5.min.js
celescope/templates/js/buttons.print.min.js
celescope/templates/js/dataTables.buttons.min.js
celescope/templates/js/dataTables.jqueryui.min.js
celescope/templates/js/jquery.dataTables.js
celescope/templates/js/jquery.dataTables.min.js
celescope/templates/js/jquery.min.3.3.1.js
celescope/templates/js/jquery.min.js
celescope/templates/js/jszip.min.js
celescope/templates/js/plotly-2.12.1.min.js
celescope/tools/__init__.py
celescope/tools/analysis_wrapper.py
celescope/tools/barcode.py
celescope/tools/cells.py
celescope/tools/consensus.py
celescope/tools/count.py
celescope/tools/cutadapt.py
celescope/tools/debug.py
celescope/tools/featureCounts.py
celescope/tools/make_ref.py
celescope/tools/matrix.py
celescope/tools/merge_table.py
celescope/tools/multi.py
celescope/tools/parse_chemistry.py
celescope/tools/plotly_plot.py
celescope/tools/prep.py
celescope/tools/prep_map.py
celescope/tools/reference.py
celescope/tools/report.py
celescope/tools/sample.py
celescope/tools/split_fastq.py
celescope/tools/star_mixin.py
celescope/tools/starsolo.py
celescope/tools/step.py
celescope/tools/target_metrics.py
celescope/tools/utils.py
celescope/tools/emptydrop_cr/__init__.py
celescope/tools/emptydrop_cr/cell_calling_3.py
celescope/tools/emptydrop_cr/get_plot_elements.py
celescope/tools/emptydrop_cr/sgt.py
celescope/tools/emptydrop_cr/stats.py
celescope/utils/__init__.py
celescope/utils/mkgtf.py
celescope_rnavirus.egg-info/PKG-INFO
celescope_rnavirus.egg-info/SOURCES.txt
celescope_rnavirus.egg-info/dependency_links.txt
celescope_rnavirus.egg-info/entry_points.txt
celescope_rnavirus.egg-info/requires.txt
celescope_rnavirus.egg-info/top_level.txt