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MANIFEST.in
README.md
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setup.py
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scripts/.DS_Store
scripts/CpG_aggregation.py
scripts/CpG_anno_position.py
scripts/CpG_anno_probe.py
scripts/CpG_density_gene_centered.py
scripts/CpG_distrb_chrom.py
scripts/CpG_distrb_gene_centered.py
scripts/CpG_distrb_region.py
scripts/CpG_logo.py
scripts/CpG_to_gene.py
scripts/beta_PCA.py
scripts/beta_UMAP.py
scripts/beta_combat.py
scripts/beta_deconvolution.py
scripts/beta_impute.py
scripts/beta_jitter_plot.py
scripts/beta_m_conversion.py
scripts/beta_profile_gene_centered.py
scripts/beta_profile_region.py
scripts/beta_selectNBest.py
scripts/beta_stacked_barplot.py
scripts/beta_stats.py
scripts/beta_tSNE.py
scripts/beta_topN.py
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scripts/dmc_Bayes.py
scripts/dmc_bb.py
scripts/dmc_fisher.py
scripts/dmc_glm.py
scripts/dmc_logit.py
scripts/dmc_nonparametric.py
scripts/dmc_ttest.py
scripts/epical.py
scripts/predict_sex.py
src/cpgmodule/BED.py
src/cpgmodule/MI.py
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src/cpgmodule/data/AltumAge_scaler.pkl
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src/cpgmodule/data/Levine.pkl
src/cpgmodule/data/Lu_DNAmTL.pkl
src/cpgmodule/data/Ped_McEwen.pkl
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src/cpgmodule/data/Zhang_BLUP.pkl
src/cpgmodule/data/Zhang_EN.pkl
src/cpgmodule/data/__init__.py
src/dmc/DunedinPACE.py
src/dmc/__init__.py
src/dmc/_version.py
src/dmc/cgID.py
src/dmc/clock_info.py
src/dmc/helpdoc.py
src/dmc/imputation.py
src/dmc/ireader.py
src/dmc/methylclocks.py
src/dmc/methyldat.py
src/dmc/tf_mse.py
src/dmc/utils.py
src/dmc/data/AltumAge.pkl
src/dmc/data/Cortical.pkl
src/dmc/data/DunedinPACE.pkl
src/dmc/data/ENCen100.pkl
src/dmc/data/ENCen40.pkl
src/dmc/data/GA_Bohlin.pkl
src/dmc/data/GA_Haftorn.pkl
src/dmc/data/GA_Knight.pkl
src/dmc/data/GA_Lee_CPC.pkl
src/dmc/data/GA_Lee_RPC.pkl
src/dmc/data/GA_Lee_rRPC.pkl
src/dmc/data/GA_Mayne.pkl
src/dmc/data/Hannum.pkl
src/dmc/data/Horvath13.pkl
src/dmc/data/Horvath13_shrunk.pkl
src/dmc/data/Horvath18.pkl
src/dmc/data/Levine.pkl
src/dmc/data/Lin.pkl
src/dmc/data/Lu_DNAmTL.pkl
src/dmc/data/MEAT.pkl
src/dmc/data/PedBE.pkl
src/dmc/data/Ped_Wu.pkl
src/dmc/data/WLMT_mm10.pkl
src/dmc/data/WLMT_mm39.pkl
src/dmc/data/Weidner.pkl
src/dmc/data/YOMT_mm10.pkl
src/dmc/data/YOMT_mm39.pkl
src/dmc/data/Zhang_BLUP.pkl
src/dmc/data/Zhang_EN.pkl
src/dmc/data/__init__.py
src/dmc/data/mammClock1.pkl
src/dmc/data/mammClock2.pkl
src/dmc/data/mammClock3.pkl
src/dmc/data/mmBlood_mm10.pkl
src/dmc/data/mmBlood_mm39.pkl
src/dmc/data/mmLiver_mm10.pkl
src/dmc/data/mmLiver_mm39.pkl
src/dmc/data/multi_platform_cpgs.pkl
src/dmc/data/scaler.pkl
src/impute_module/__init__.py
src/impute_module/blockimpute.py
src/impute_module/bootstrap.py
src/impute_module/common.py
src/impute_module/extref.py
src/impute_module/imputelib.py
src/impute_module/softimpute.py
src/impute_module/solver.py
test_imputation/evaluation2.py
tests/test_beta_impute_cli.py
tests/test_epical_cli.py