CpGtools Logo

CpGtools Documentation

  • 1. Overview
  • 2. Installation
  • 3. CpGtools Release History

Data Format

  • 1. Input File and Data Format

Test and Demo Datasets

  • 1. Pre-compiled datasets

Usage Information

  • 1. CpG_aggregation.py
  • 2. CpG_anno_position.py
  • 3. CpG_anno_probe.py
  • 4. CpG_density_gene_centered.py
  • 5. CpG_distrb_chrom.py
  • 6. CpG_distrb_gene_centered.py
  • 7. CpG_distrb_region.py
  • 8. CpG_logo.py
  • 9. CpG_to_gene.py
  • 10. beta_PCA.py
  • 11. beta_UMAP.py
  • 12. beta_combat.py
  • 13. beta_impute.py
  • 14. beta_jitter_plot.py
  • 15. beta_m_conversion.py
  • 16. beta_profile_gene_centered.py
  • 17. beta_profile_region.py
  • 18. beta_selectNBest.py
  • 19. beta_stacked_barplot.py
  • 20. beta_stats.py
  • 21. beta_tSNE.py
  • 22. beta_topN.py
  • 23. beta_trichotmize.py
  • 24. dmc_Bayes.py
  • 25. dmc_bb.py
  • 26. dmc_fisher.py
  • 27. dmc_glm.py
  • 28. dmc_logit.py
  • 29. dmc_nonparametric.py
  • 30. dmc_ttest.py
  • 31. predict_sex.py

Compare Differential Analysis Tools

  • 1. Compare Differential CpG Analysis Tools
  • 2. P-value distributions

Liscense

  • LICENSE

Reference

  • Reference
CpGtools
  • Search

© Copyright 2024-2026, Liguo Wang. Last updated on August 03, 2026.