LICENSE
README.md
pyproject.toml
requirements-batch.txt
requirements-dev.txt
requirements-docs.txt
requirements.txt
MaldiAMRKit.egg-info/PKG-INFO
MaldiAMRKit.egg-info/SOURCES.txt
MaldiAMRKit.egg-info/dependency_links.txt
MaldiAMRKit.egg-info/entry_points.txt
MaldiAMRKit.egg-info/requires.txt
MaldiAMRKit.egg-info/top_level.txt
maldiamrkit/__init__.py
maldiamrkit/_compat.py
maldiamrkit/cli.py
maldiamrkit/dataset.py
maldiamrkit/filters.py
maldiamrkit/py.typed
maldiamrkit/spectrum.py
maldiamrkit/alignment/__init__.py
maldiamrkit/alignment/raw_warping.py
maldiamrkit/alignment/strategies.py
maldiamrkit/alignment/warping.py
maldiamrkit/data/__init__.py
maldiamrkit/data/builder.py
maldiamrkit/data/dataset_layouts.py
maldiamrkit/data/duplicates.py
maldiamrkit/data/input_layouts.py
maldiamrkit/data/loader.py
maldiamrkit/data/site_info.py
maldiamrkit/data/breakpoints/example.yaml
maldiamrkit/data/breakpoints/eucast/README.md
maldiamrkit/data/breakpoints/eucast/eucast_v1.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v1.1.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v1.2.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v1.3.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v10.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v11.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v12.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v13.1.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v14.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v15.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v16.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v2.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v4.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v5.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v6.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v7.1.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v8.0.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v8.1.yaml
maldiamrkit/data/breakpoints/eucast/eucast_v9.0.yaml
maldiamrkit/detection/__init__.py
maldiamrkit/detection/peak_detector.py
maldiamrkit/differential/__init__.py
maldiamrkit/differential/analysis.py
maldiamrkit/differential/plots.py
maldiamrkit/differential/stats.py
maldiamrkit/drift/__init__.py
maldiamrkit/drift/monitor.py
maldiamrkit/drift/pca_drift.py
maldiamrkit/drift/peak_drift.py
maldiamrkit/drift/plots.py
maldiamrkit/drift/reference.py
maldiamrkit/evaluation/__init__.py
maldiamrkit/evaluation/label_encoder.py
maldiamrkit/evaluation/metrics.py
maldiamrkit/evaluation/mic_regression.py
maldiamrkit/evaluation/splitting.py
maldiamrkit/io/__init__.py
maldiamrkit/io/mic.py
maldiamrkit/io/readers.py
maldiamrkit/preprocessing/__init__.py
maldiamrkit/preprocessing/binning.py
maldiamrkit/preprocessing/merging.py
maldiamrkit/preprocessing/pipeline.py
maldiamrkit/preprocessing/preprocessing_pipeline.py
maldiamrkit/preprocessing/quality.py
maldiamrkit/preprocessing/transformers.py
maldiamrkit/similarity/__init__.py
maldiamrkit/similarity/clustering.py
maldiamrkit/similarity/metrics.py
maldiamrkit/similarity/pairwise.py
maldiamrkit/similarity/plots.py
maldiamrkit/susceptibility/__init__.py
maldiamrkit/susceptibility/breakpoint.py
maldiamrkit/susceptibility/label_encoder.py
maldiamrkit/susceptibility/mic_encoder.py
maldiamrkit/visualization/__init__.py
maldiamrkit/visualization/_common.py
maldiamrkit/visualization/alignment_plots.py
maldiamrkit/visualization/exploratory_plots.py
maldiamrkit/visualization/peak_plots.py
maldiamrkit/visualization/spectrum_plots.py
tests/test_compat.py
tests/test_numerical_edge_cases.py
tests/test_peak_detector.py