LICENSE
README.md
pyproject.toml
setup.py
spoqc/__init__.py
spoqc/__main__.py
spoqc/cli.py
spoqc/folder_structure.py
spoqc/helperfuncs.py
spoqc/plot_config.py
spoqc/process_datasets.py
spoqc/run_unittests.py
spoqc.egg-info/PKG-INFO
spoqc.egg-info/SOURCES.txt
spoqc.egg-info/dependency_links.txt
spoqc.egg-info/entry_points.txt
spoqc.egg-info/requires.txt
spoqc.egg-info/top_level.txt
spoqc/additional_analysis/__init__.py
spoqc/additional_analysis/analysis_funcs.py
spoqc/additional_analysis/category_analysis.py
spoqc/additional_analysis/cluster_analysis.py
spoqc/additional_analysis/funkyheatmap.py
spoqc/general/__init__.py
spoqc/general/normalizations.py
spoqc/general/valid_geometries.py
spoqc/hqr/__init__.py
spoqc/hqr/combine_masks.py
spoqc/hqr/combine_masks_zoom.py
spoqc/hqr/hqtr_memopt.py
spoqc/hqr/markov_random_field.py
spoqc/hqr/markov_random_field_zarr.py
spoqc/hqr/markov_random_field_zarr_parallel.py
spoqc/image_analysis/__init__.py
spoqc/image_analysis/_slidingwindow.py
spoqc/image_analysis/bounding_boxes.py
spoqc/image_analysis/celltype_analysis.py
spoqc/image_analysis/pixel_scoring_dask.py
spoqc/image_analysis/pixel_scoring_refinement.py
spoqc/image_analysis/structure_analysis.py
spoqc/metrics/__init__.py
spoqc/metrics/image/__init__.py
spoqc/metrics/image/edge_strength.py
spoqc/metrics/image/energy.py
spoqc/metrics/image/entropy.py
spoqc/metrics/image/fractals.py
spoqc/metrics/image/homogenity.py
spoqc/metrics/image/lbp.py
spoqc/metrics/image/pixel_score.py
spoqc/metrics/image/relevance.py
spoqc/metrics/image/uniformity.py
spoqc/metrics/image/utility.py
spoqc/metrics/segmentation/__init__.py
spoqc/metrics/segmentation/border_score.py
spoqc/metrics/segmentation/bubble_score.py
spoqc/metrics/segmentation/convexity.py
spoqc/metrics/segmentation/doublet_score.py
spoqc/metrics/segmentation/island_score.py
spoqc/metrics/segmentation/nuclei_count.py
spoqc/metrics/segmentation/overlap_area.py
spoqc/metrics/segmentation/sc_metrics.py
spoqc/metrics/segmentation/void.py
spoqc/metrics/transcript_density/__init__.py
spoqc/metrics/transcript_density/ac_image.py
spoqc/metrics/transcript_density/global_moran_I.py
spoqc/metrics/transcript_density/local_moran_I.py
spoqc/metrics/transcript_density/qv_image.py
spoqc/metrics/transcript_density/transcript_density_image.py
spoqc/priors/__init__.py
spoqc/priors/combine_priors.py
spoqc/priors/hqcr/__init__.py
spoqc/priors/hqcr/doublet_distance.py
spoqc/priors/hqcr/transcript_counts.py
spoqc/priors/hqpr/__init__.py
spoqc/priors/hqpr/pixel_score.py
spoqc/priors/hqtr/__init__.py
spoqc/priors/hqtr/ac_or_qv.py
spoqc/subworkflows/__init__.py
spoqc/subworkflows/final_report.py
spoqc/subworkflows/hqcr.py
spoqc/subworkflows/hqpr.py
spoqc/subworkflows/hqtr.py
spoqc/subworkflows/qc_additional_analysis.py
spoqc/subworkflows/qc_ambient.py
spoqc/subworkflows/qc_bubble.py
spoqc/subworkflows/qc_cell.py
spoqc/subworkflows/qc_cellcycle.py
spoqc/subworkflows/qc_doublets.py
spoqc/subworkflows/qc_marker.py
spoqc/subworkflows/qc_model.py
spoqc/subworkflows/qc_sc.py
spoqc/subworkflows/qc_transcript.py
spoqc/subworkflows/qc_void.py
spoqc/subworkflows/qc_wsi.py
spoqc/unittests/__init__.py
spoqc/unittests/test_all.py
tests/test_cli.py
tests/test_environment.py
tests/test_import.py