## htsjdk.samtools.metrics.StringHeader
# CollectMultipleMetrics INPUT=in/sample.bam OUTPUT=picard/cmm METRIC_ACCUMULATION_LEVEL=[ALL_READS, LIBRARY, SAMPLE, READ_GROUP] PROGRAM=[CollectAlignmentSummaryMetrics, CollectBaseDistributionByCycle, CollectGcBiasMetrics, CollectInsertSizeMetrics, CollectQualityYieldMetrics, CollectSequencingArtifactMetrics, MeanQualityByCycle, QualityScoreDistribution] REFERENCE_SEQUENCE=in/reference.shifted.for.crams.fasta    ASSUME_SORTED=true STOP_AFTER=0 INCLUDE_UNPAIRED=false DO_NOT_CREATE_PLOTS=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:42:13 HST 2026

## METRICS CLASS	picard.analysis.artifacts.SequencingArtifactMetrics$BaitBiasDetailMetrics
SAMPLE_ALIAS	LIBRARY	REF_BASE	ALT_BASE	CONTEXT	FWD_CXT_REF_BASES	FWD_CXT_ALT_BASES	REV_CXT_REF_BASES	REV_CXT_ALT_BASES	FWD_ERROR_RATE	REV_ERROR_RATE	ERROR_RATE	QSCORE
NA12891	Pond-492101	A	C	AAA	3136	1	1989	4	0.000319	0.002007	0	100
NA12891	Pond-492101	A	C	AAC	899	0	1049	0	0	0	0	100
NA12891	Pond-492101	A	C	AAG	2470	3	1039	0	0.001213	0	0.001213	29
NA12891	Pond-492101	A	C	AAT	1671	1	1196	1	0.000598	0.000835	0	100
NA12891	Pond-492101	A	C	CAA	1254	4	1087	3	0.00318	0.002752	0.000427	34
NA12891	Pond-492101	A	C	CAC	986	1	1139	1	0.001013	0.000877	0.000136	39
NA12891	Pond-492101	A	C	CAG	1474	0	1222	1	0	0.000818	0	100
NA12891	Pond-492101	A	C	CAT	1414	2	1831	2	0.001412	0.001091	0.000321	35
NA12891	Pond-492101	A	C	GAA	2550	2	1247	3	0.000784	0.0024	0	100
NA12891	Pond-492101	A	C	GAC	606	0	542	0	0	0	0	100
NA12891	Pond-492101	A	C	GAG	1592	1	837	2	0.000628	0.002384	0	100
NA12891	Pond-492101	A	C	GAT	1393	1	1096	1	0.000717	0.000912	0	100
NA12891	Pond-492101	A	C	TAA	1252	1	936	3	0.000798	0.003195	0	100
NA12891	Pond-492101	A	C	TAC	575	0	634	1	0	0.001575	0	100
NA12891	Pond-492101	A	C	TAG	810	0	734	0	0	0	0	100
NA12891	Pond-492101	A	C	TAT	962	0	1274	0	0	0	0	100
NA12891	Pond-492101	A	G	AAA	3136	1	1989	1	0.000319	0.000503	0	100
NA12891	Pond-492101	A	G	AAC	899	0	1049	0	0	0	0	100
NA12891	Pond-492101	A	G	AAG	2470	2	1039	1	0.000809	0.000962	0	100
NA12891	Pond-492101	A	G	AAT	1671	3	1196	0	0.001792	0	0.001792	27
NA12891	Pond-492101	A	G	CAA	1254	0	1087	0	0	0	0	100
NA12891	Pond-492101	A	G	CAC	986	0	1139	0	0	0	0	100
NA12891	Pond-492101	A	G	CAG	1474	0	1222	1	0	0.000818	0	100
NA12891	Pond-492101	A	G	CAT	1414	20	1831	0	0.013947	0	0.013947	19
NA12891	Pond-492101	A	G	GAA	2550	20	1247	0	0.007782	0	0.007782	21
NA12891	Pond-492101	A	G	GAC	606	0	542	0	0	0	0	100
NA12891	Pond-492101	A	G	GAG	1592	1	837	0	0.000628	0	0.000628	32
NA12891	Pond-492101	A	G	GAT	1393	1	1096	0	0.000717	0	0.000717	31
NA12891	Pond-492101	A	G	TAA	1252	0	936	0	0	0	0	100
NA12891	Pond-492101	A	G	TAC	575	0	634	0	0	0	0	100
NA12891	Pond-492101	A	G	TAG	810	0	734	0	0	0	0	100
NA12891	Pond-492101	A	G	TAT	962	0	1274	0	0	0	0	100
NA12891	Pond-492101	A	T	AAA	3136	0	1989	0	0	0	0	100
NA12891	Pond-492101	A	T	AAC	899	0	1049	0	0	0	0	100
NA12891	Pond-492101	A	T	AAG	2470	0	1039	0	0	0	0	100
NA12891	Pond-492101	A	T	AAT	1671	0	1196	0	0	0	0	100
NA12891	Pond-492101	A	T	CAA	1254	0	1087	0	0	0	0	100
NA12891	Pond-492101	A	T	CAC	986	0	1139	1	0	0.000877	0	100
NA12891	Pond-492101	A	T	CAG	1474	0	1222	0	0	0	0	100
NA12891	Pond-492101	A	T	CAT	1414	0	1831	0	0	0	0	100
NA12891	Pond-492101	A	T	GAA	2550	0	1247	0	0	0	0	100
NA12891	Pond-492101	A	T	GAC	606	0	542	0	0	0	0	100
NA12891	Pond-492101	A	T	GAG	1592	0	837	0	0	0	0	100
NA12891	Pond-492101	A	T	GAT	1393	0	1096	0	0	0	0	100
NA12891	Pond-492101	A	T	TAA	1252	0	936	0	0	0	0	100
NA12891	Pond-492101	A	T	TAC	575	0	634	0	0	0	0	100
NA12891	Pond-492101	A	T	TAG	810	0	734	0	0	0	0	100
NA12891	Pond-492101	A	T	TAT	962	0	1274	0	0	0	0	100
NA12891	Pond-492101	C	A	ACA	1567	2	1367	2	0.001275	0.001461	0	100
NA12891	Pond-492101	C	A	ACC	604	0	780	0	0	0	0	100
NA12891	Pond-492101	C	A	ACG	122	0	33	0	0	0	0	100
NA12891	Pond-492101	C	A	ACT	757	0	1319	0	0	0	0	100
NA12891	Pond-492101	C	A	CCA	1167	0	1914	9	0	0.00468	0	100
NA12891	Pond-492101	C	A	CCC	953	0	1208	0	0	0	0	100
NA12891	Pond-492101	C	A	CCG	149	0	292	0	0	0	0	100
NA12891	Pond-492101	C	A	CCT	1340	0	1936	1	0	0.000516	0	100
NA12891	Pond-492101	C	A	GCA	1092	0	887	0	0	0	0	100
NA12891	Pond-492101	C	A	GCC	738	0	826	0	0	0	0	100
NA12891	Pond-492101	C	A	GCG	183	0	136	0	0	0	0	100
NA12891	Pond-492101	C	A	GCT	661	0	810	0	0	0	0	100
NA12891	Pond-492101	C	A	TCA	1323	0	1268	0	0	0	0	100
NA12891	Pond-492101	C	A	TCC	1338	1	2539	0	0.000747	0	0.000747	31
NA12891	Pond-492101	C	A	TCG	23	0	74	0	0	0	0	100
NA12891	Pond-492101	C	A	TCT	1084	0	2384	0	0	0	0	100
NA12891	Pond-492101	C	G	ACA	1567	0	1367	0	0	0	0	100
NA12891	Pond-492101	C	G	ACC	604	0	780	1	0	0.00128	0	100
NA12891	Pond-492101	C	G	ACG	122	0	33	0	0	0	0	100
NA12891	Pond-492101	C	G	ACT	757	0	1319	0	0	0	0	100
NA12891	Pond-492101	C	G	CCA	1167	1	1914	0	0.000856	0	0.000856	31
NA12891	Pond-492101	C	G	CCC	953	0	1208	0	0	0	0	100
NA12891	Pond-492101	C	G	CCG	149	0	292	0	0	0	0	100
NA12891	Pond-492101	C	G	CCT	1340	0	1936	0	0	0	0	100
NA12891	Pond-492101	C	G	GCA	1092	0	887	0	0	0	0	100
NA12891	Pond-492101	C	G	GCC	738	0	826	0	0	0	0	100
NA12891	Pond-492101	C	G	GCG	183	0	136	0	0	0	0	100
NA12891	Pond-492101	C	G	GCT	661	0	810	0	0	0	0	100
NA12891	Pond-492101	C	G	TCA	1323	0	1268	0	0	0	0	100
NA12891	Pond-492101	C	G	TCC	1338	0	2539	0	0	0	0	100
NA12891	Pond-492101	C	G	TCG	23	0	74	0	0	0	0	100
NA12891	Pond-492101	C	G	TCT	1084	38	2384	0	0.033868	0	0.033868	15
NA12891	Pond-492101	C	T	ACA	1567	0	1367	0	0	0	0	100
NA12891	Pond-492101	C	T	ACC	604	0	780	0	0	0	0	100
NA12891	Pond-492101	C	T	ACG	122	42	33	0	0.256098	0	0.256098	6
NA12891	Pond-492101	C	T	ACT	757	0	1319	0	0	0	0	100
NA12891	Pond-492101	C	T	CCA	1167	0	1914	0	0	0	0	100
NA12891	Pond-492101	C	T	CCC	953	0	1208	0	0	0	0	100
NA12891	Pond-492101	C	T	CCG	149	0	292	0	0	0	0	100
NA12891	Pond-492101	C	T	CCT	1340	18	1936	0	0.013255	0	0.013255	19
NA12891	Pond-492101	C	T	GCA	1092	0	887	0	0	0	0	100
NA12891	Pond-492101	C	T	GCC	738	0	826	1	0	0.001209	0	100
NA12891	Pond-492101	C	T	GCG	183	0	136	0	0	0	0	100
NA12891	Pond-492101	C	T	GCT	661	0	810	0	0	0	0	100
NA12891	Pond-492101	C	T	TCA	1323	0	1268	0	0	0	0	100
NA12891	Pond-492101	C	T	TCC	1338	0	2539	1	0	0.000394	0	100
NA12891	Pond-492101	C	T	TCG	23	0	74	0	0	0	0	100
NA12891	Pond-492101	C	T	TCT	1084	0	2384	1	0	0.000419	0	100
NA12891	Pond-492101	G	A	AGA	2384	1	1084	0	0.000419	0	0.000419	34
NA12891	Pond-492101	G	A	AGC	810	0	661	0	0	0	0	100
NA12891	Pond-492101	G	A	AGG	1936	0	1340	18	0	0.013255	0	100
NA12891	Pond-492101	G	A	AGT	1319	0	757	0	0	0	0	100
NA12891	Pond-492101	G	A	CGA	74	0	23	0	0	0	0	100
NA12891	Pond-492101	G	A	CGC	136	0	183	0	0	0	0	100
NA12891	Pond-492101	G	A	CGG	292	0	149	0	0	0	0	100
NA12891	Pond-492101	G	A	CGT	33	0	122	42	0	0.256098	0	100
NA12891	Pond-492101	G	A	GGA	2539	1	1338	0	0.000394	0	0.000394	34
NA12891	Pond-492101	G	A	GGC	826	1	738	0	0.001209	0	0.001209	29
NA12891	Pond-492101	G	A	GGG	1208	0	953	0	0	0	0	100
NA12891	Pond-492101	G	A	GGT	780	0	604	0	0	0	0	100
NA12891	Pond-492101	G	A	TGA	1268	0	1323	0	0	0	0	100
NA12891	Pond-492101	G	A	TGC	887	0	1092	0	0	0	0	100
NA12891	Pond-492101	G	A	TGG	1914	0	1167	0	0	0	0	100
NA12891	Pond-492101	G	A	TGT	1367	0	1567	0	0	0	0	100
NA12891	Pond-492101	G	C	AGA	2384	0	1084	38	0	0.033868	0	100
NA12891	Pond-492101	G	C	AGC	810	0	661	0	0	0	0	100
NA12891	Pond-492101	G	C	AGG	1936	0	1340	0	0	0	0	100
NA12891	Pond-492101	G	C	AGT	1319	0	757	0	0	0	0	100
NA12891	Pond-492101	G	C	CGA	74	0	23	0	0	0	0	100
NA12891	Pond-492101	G	C	CGC	136	0	183	0	0	0	0	100
NA12891	Pond-492101	G	C	CGG	292	0	149	0	0	0	0	100
NA12891	Pond-492101	G	C	CGT	33	0	122	0	0	0	0	100
NA12891	Pond-492101	G	C	GGA	2539	0	1338	0	0	0	0	100
NA12891	Pond-492101	G	C	GGC	826	0	738	0	0	0	0	100
NA12891	Pond-492101	G	C	GGG	1208	0	953	0	0	0	0	100
NA12891	Pond-492101	G	C	GGT	780	1	604	0	0.00128	0	0.00128	29
NA12891	Pond-492101	G	C	TGA	1268	0	1323	0	0	0	0	100
NA12891	Pond-492101	G	C	TGC	887	0	1092	0	0	0	0	100
NA12891	Pond-492101	G	C	TGG	1914	0	1167	1	0	0.000856	0	100
NA12891	Pond-492101	G	C	TGT	1367	0	1567	0	0	0	0	100
NA12891	Pond-492101	G	T	AGA	2384	0	1084	0	0	0	0	100
NA12891	Pond-492101	G	T	AGC	810	0	661	0	0	0	0	100
NA12891	Pond-492101	G	T	AGG	1936	1	1340	0	0.000516	0	0.000516	33
NA12891	Pond-492101	G	T	AGT	1319	0	757	0	0	0	0	100
NA12891	Pond-492101	G	T	CGA	74	0	23	0	0	0	0	100
NA12891	Pond-492101	G	T	CGC	136	0	183	0	0	0	0	100
NA12891	Pond-492101	G	T	CGG	292	0	149	0	0	0	0	100
NA12891	Pond-492101	G	T	CGT	33	0	122	0	0	0	0	100
NA12891	Pond-492101	G	T	GGA	2539	0	1338	1	0	0.000747	0	100
NA12891	Pond-492101	G	T	GGC	826	0	738	0	0	0	0	100
NA12891	Pond-492101	G	T	GGG	1208	0	953	0	0	0	0	100
NA12891	Pond-492101	G	T	GGT	780	0	604	0	0	0	0	100
NA12891	Pond-492101	G	T	TGA	1268	0	1323	0	0	0	0	100
NA12891	Pond-492101	G	T	TGC	887	0	1092	0	0	0	0	100
NA12891	Pond-492101	G	T	TGG	1914	9	1167	0	0.00468	0	0.00468	23
NA12891	Pond-492101	G	T	TGT	1367	2	1567	2	0.001461	0.001275	0.000186	37
NA12891	Pond-492101	T	A	ATA	1274	0	962	0	0	0	0	100
NA12891	Pond-492101	T	A	ATC	1096	0	1393	0	0	0	0	100
NA12891	Pond-492101	T	A	ATG	1831	0	1414	0	0	0	0	100
NA12891	Pond-492101	T	A	ATT	1196	0	1671	0	0	0	0	100
NA12891	Pond-492101	T	A	CTA	734	0	810	0	0	0	0	100
NA12891	Pond-492101	T	A	CTC	837	0	1592	0	0	0	0	100
NA12891	Pond-492101	T	A	CTG	1222	0	1474	0	0	0	0	100
NA12891	Pond-492101	T	A	CTT	1039	0	2470	0	0	0	0	100
NA12891	Pond-492101	T	A	GTA	634	0	575	0	0	0	0	100
NA12891	Pond-492101	T	A	GTC	542	0	606	0	0	0	0	100
NA12891	Pond-492101	T	A	GTG	1139	1	986	0	0.000877	0	0.000877	31
NA12891	Pond-492101	T	A	GTT	1049	0	899	0	0	0	0	100
NA12891	Pond-492101	T	A	TTA	936	0	1252	0	0	0	0	100
NA12891	Pond-492101	T	A	TTC	1247	0	2550	0	0	0	0	100
NA12891	Pond-492101	T	A	TTG	1087	0	1254	0	0	0	0	100
NA12891	Pond-492101	T	A	TTT	1989	0	3136	0	0	0	0	100
NA12891	Pond-492101	T	C	ATA	1274	0	962	0	0	0	0	100
NA12891	Pond-492101	T	C	ATC	1096	0	1393	1	0	0.000717	0	100
NA12891	Pond-492101	T	C	ATG	1831	0	1414	20	0	0.013947	0	100
NA12891	Pond-492101	T	C	ATT	1196	0	1671	3	0	0.001792	0	100
NA12891	Pond-492101	T	C	CTA	734	0	810	0	0	0	0	100
NA12891	Pond-492101	T	C	CTC	837	0	1592	1	0	0.000628	0	100
NA12891	Pond-492101	T	C	CTG	1222	1	1474	0	0.000818	0	0.000818	31
NA12891	Pond-492101	T	C	CTT	1039	1	2470	2	0.000962	0.000809	0.000152	38
NA12891	Pond-492101	T	C	GTA	634	0	575	0	0	0	0	100
NA12891	Pond-492101	T	C	GTC	542	0	606	0	0	0	0	100
NA12891	Pond-492101	T	C	GTG	1139	0	986	0	0	0	0	100
NA12891	Pond-492101	T	C	GTT	1049	0	899	0	0	0	0	100
NA12891	Pond-492101	T	C	TTA	936	0	1252	0	0	0	0	100
NA12891	Pond-492101	T	C	TTC	1247	0	2550	20	0	0.007782	0	100
NA12891	Pond-492101	T	C	TTG	1087	0	1254	0	0	0	0	100
NA12891	Pond-492101	T	C	TTT	1989	1	3136	1	0.000503	0.000319	0.000184	37
NA12891	Pond-492101	T	G	ATA	1274	0	962	0	0	0	0	100
NA12891	Pond-492101	T	G	ATC	1096	1	1393	1	0.000912	0.000717	0.000194	37
NA12891	Pond-492101	T	G	ATG	1831	2	1414	2	0.001091	0.001412	0	100
NA12891	Pond-492101	T	G	ATT	1196	1	1671	1	0.000835	0.000598	0.000237	36
NA12891	Pond-492101	T	G	CTA	734	0	810	0	0	0	0	100
NA12891	Pond-492101	T	G	CTC	837	2	1592	1	0.002384	0.000628	0.001756	28
NA12891	Pond-492101	T	G	CTG	1222	1	1474	0	0.000818	0	0.000818	31
NA12891	Pond-492101	T	G	CTT	1039	0	2470	3	0	0.001213	0	100
NA12891	Pond-492101	T	G	GTA	634	1	575	0	0.001575	0	0.001575	28
NA12891	Pond-492101	T	G	GTC	542	0	606	0	0	0	0	100
NA12891	Pond-492101	T	G	GTG	1139	1	986	1	0.000877	0.001013	0	100
NA12891	Pond-492101	T	G	GTT	1049	0	899	0	0	0	0	100
NA12891	Pond-492101	T	G	TTA	936	3	1252	1	0.003195	0.000798	0.002397	26
NA12891	Pond-492101	T	G	TTC	1247	3	2550	2	0.0024	0.000784	0.001616	28
NA12891	Pond-492101	T	G	TTG	1087	3	1254	4	0.002752	0.00318	0	100
NA12891	Pond-492101	T	G	TTT	1989	4	3136	1	0.002007	0.000319	0.001688	28
NA12891	NormPond-544932	A	C	AAA	2386	1	1671	1	0.000419	0.000598	0	100
NA12891	NormPond-544932	A	C	AAC	747	0	862	0	0	0	0	100
NA12891	NormPond-544932	A	C	AAG	1916	1	839	1	0.000522	0.00119	0	100
NA12891	NormPond-544932	A	C	AAT	1413	0	1102	0	0	0	0	100
NA12891	NormPond-544932	A	C	CAA	1061	8	914	0	0.007484	0	0.007484	21
NA12891	NormPond-544932	A	C	CAC	856	1	979	0	0.001167	0	0.001167	29
NA12891	NormPond-544932	A	C	CAG	1164	0	1085	0	0	0	0	100
NA12891	NormPond-544932	A	C	CAT	1220	1	1423	1	0.000819	0.000702	0.000117	39
NA12891	NormPond-544932	A	C	GAA	1977	0	1062	0	0	0	0	100
NA12891	NormPond-544932	A	C	GAC	475	0	451	0	0	0	0	100
NA12891	NormPond-544932	A	C	GAG	1170	0	759	0	0	0	0	100
NA12891	NormPond-544932	A	C	GAT	1045	0	894	1	0	0.001117	0	100
NA12891	NormPond-544932	A	C	TAA	1016	0	813	0	0	0	0	100
NA12891	NormPond-544932	A	C	TAC	504	0	510	1	0	0.001957	0	100
NA12891	NormPond-544932	A	C	TAG	684	0	622	1	0	0.001605	0	100
NA12891	NormPond-544932	A	C	TAT	752	0	988	0	0	0	0	100
NA12891	NormPond-544932	A	G	AAA	2386	0	1671	0	0	0	0	100
NA12891	NormPond-544932	A	G	AAC	747	0	862	0	0	0	0	100
NA12891	NormPond-544932	A	G	AAG	1916	1	839	0	0.000522	0	0.000522	33
NA12891	NormPond-544932	A	G	AAT	1413	0	1102	0	0	0	0	100
NA12891	NormPond-544932	A	G	CAA	1061	0	914	0	0	0	0	100
NA12891	NormPond-544932	A	G	CAC	856	0	979	0	0	0	0	100
NA12891	NormPond-544932	A	G	CAG	1164	0	1085	0	0	0	0	100
NA12891	NormPond-544932	A	G	CAT	1220	17	1423	0	0.013743	0	0.013743	19
NA12891	NormPond-544932	A	G	GAA	1977	9	1062	0	0.004532	0	0.004532	23
NA12891	NormPond-544932	A	G	GAC	475	0	451	0	0	0	0	100
NA12891	NormPond-544932	A	G	GAG	1170	0	759	0	0	0	0	100
NA12891	NormPond-544932	A	G	GAT	1045	0	894	0	0	0	0	100
NA12891	NormPond-544932	A	G	TAA	1016	0	813	0	0	0	0	100
NA12891	NormPond-544932	A	G	TAC	504	0	510	0	0	0	0	100
NA12891	NormPond-544932	A	G	TAG	684	0	622	0	0	0	0	100
NA12891	NormPond-544932	A	G	TAT	752	0	988	1	0	0.001011	0	100
NA12891	NormPond-544932	A	T	AAA	2386	0	1671	0	0	0	0	100
NA12891	NormPond-544932	A	T	AAC	747	0	862	0	0	0	0	100
NA12891	NormPond-544932	A	T	AAG	1916	0	839	0	0	0	0	100
NA12891	NormPond-544932	A	T	AAT	1413	0	1102	0	0	0	0	100
NA12891	NormPond-544932	A	T	CAA	1061	0	914	1	0	0.001093	0	100
NA12891	NormPond-544932	A	T	CAC	856	0	979	0	0	0	0	100
NA12891	NormPond-544932	A	T	CAG	1164	0	1085	0	0	0	0	100
NA12891	NormPond-544932	A	T	CAT	1220	1	1423	0	0.000819	0	0.000819	31
NA12891	NormPond-544932	A	T	GAA	1977	0	1062	0	0	0	0	100
NA12891	NormPond-544932	A	T	GAC	475	0	451	0	0	0	0	100
NA12891	NormPond-544932	A	T	GAG	1170	0	759	0	0	0	0	100
NA12891	NormPond-544932	A	T	GAT	1045	0	894	0	0	0	0	100
NA12891	NormPond-544932	A	T	TAA	1016	1	813	0	0.000983	0	0.000983	30
NA12891	NormPond-544932	A	T	TAC	504	0	510	0	0	0	0	100
NA12891	NormPond-544932	A	T	TAG	684	0	622	0	0	0	0	100
NA12891	NormPond-544932	A	T	TAT	752	0	988	1	0	0.001011	0	100
NA12891	NormPond-544932	C	A	ACA	1304	0	1146	0	0	0	0	100
NA12891	NormPond-544932	C	A	ACC	542	0	595	0	0	0	0	100
NA12891	NormPond-544932	C	A	ACG	101	0	26	0	0	0	0	100
NA12891	NormPond-544932	C	A	ACT	641	0	1126	0	0	0	0	100
NA12891	NormPond-544932	C	A	CCA	1060	0	1507	9	0	0.005937	0	100
NA12891	NormPond-544932	C	A	CCC	852	1	945	0	0.001172	0	0.001172	29
NA12891	NormPond-544932	C	A	CCG	133	0	222	0	0	0	0	100
NA12891	NormPond-544932	C	A	CCT	1154	0	1440	1	0	0.000694	0	100
NA12891	NormPond-544932	C	A	GCA	889	1	766	0	0.001124	0	0.001124	29
NA12891	NormPond-544932	C	A	GCC	681	0	714	0	0	0	0	100
NA12891	NormPond-544932	C	A	GCG	141	0	120	0	0	0	0	100
NA12891	NormPond-544932	C	A	GCT	591	0	690	0	0	0	0	100
NA12891	NormPond-544932	C	A	TCA	1095	1	1092	0	0.000912	0	0.000912	30
NA12891	NormPond-544932	C	A	TCC	1146	0	1870	1	0	0.000534	0	100
NA12891	NormPond-544932	C	A	TCG	26	0	68	0	0	0	0	100
NA12891	NormPond-544932	C	A	TCT	912	1	1768	0	0.001095	0	0.001095	30
NA12891	NormPond-544932	C	G	ACA	1304	0	1146	0	0	0	0	100
NA12891	NormPond-544932	C	G	ACC	542	0	595	0	0	0	0	100
NA12891	NormPond-544932	C	G	ACG	101	0	26	0	0	0	0	100
NA12891	NormPond-544932	C	G	ACT	641	0	1126	0	0	0	0	100
NA12891	NormPond-544932	C	G	CCA	1060	0	1507	0	0	0	0	100
NA12891	NormPond-544932	C	G	CCC	852	0	945	0	0	0	0	100
NA12891	NormPond-544932	C	G	CCG	133	0	222	0	0	0	0	100
NA12891	NormPond-544932	C	G	CCT	1154	0	1440	0	0	0	0	100
NA12891	NormPond-544932	C	G	GCA	889	0	766	0	0	0	0	100
NA12891	NormPond-544932	C	G	GCC	681	0	714	0	0	0	0	100
NA12891	NormPond-544932	C	G	GCG	141	0	120	0	0	0	0	100
NA12891	NormPond-544932	C	G	GCT	591	0	690	0	0	0	0	100
NA12891	NormPond-544932	C	G	TCA	1095	0	1092	0	0	0	0	100
NA12891	NormPond-544932	C	G	TCC	1146	0	1870	0	0	0	0	100
NA12891	NormPond-544932	C	G	TCG	26	0	68	0	0	0	0	100
NA12891	NormPond-544932	C	G	TCT	912	35	1768	0	0.036959	0	0.036959	14
NA12891	NormPond-544932	C	T	ACA	1304	0	1146	1	0	0.000872	0	100
NA12891	NormPond-544932	C	T	ACC	542	0	595	1	0	0.001678	0	100
NA12891	NormPond-544932	C	T	ACG	101	37	26	0	0.268116	0	0.268116	6
NA12891	NormPond-544932	C	T	ACT	641	0	1126	0	0	0	0	100
NA12891	NormPond-544932	C	T	CCA	1060	0	1507	0	0	0	0	100
NA12891	NormPond-544932	C	T	CCC	852	0	945	0	0	0	0	100
NA12891	NormPond-544932	C	T	CCG	133	0	222	0	0	0	0	100
NA12891	NormPond-544932	C	T	CCT	1154	18	1440	0	0.015358	0	0.015358	18
NA12891	NormPond-544932	C	T	GCA	889	0	766	0	0	0	0	100
NA12891	NormPond-544932	C	T	GCC	681	0	714	0	0	0	0	100
NA12891	NormPond-544932	C	T	GCG	141	0	120	0	0	0	0	100
NA12891	NormPond-544932	C	T	GCT	591	0	690	0	0	0	0	100
NA12891	NormPond-544932	C	T	TCA	1095	0	1092	0	0	0	0	100
NA12891	NormPond-544932	C	T	TCC	1146	0	1870	0	0	0	0	100
NA12891	NormPond-544932	C	T	TCG	26	0	68	0	0	0	0	100
NA12891	NormPond-544932	C	T	TCT	912	0	1768	2	0	0.00113	0	100
NA12891	NormPond-544932	G	A	AGA	1768	2	912	0	0.00113	0	0.00113	29
NA12891	NormPond-544932	G	A	AGC	690	0	591	0	0	0	0	100
NA12891	NormPond-544932	G	A	AGG	1440	0	1154	18	0	0.015358	0	100
NA12891	NormPond-544932	G	A	AGT	1126	0	641	0	0	0	0	100
NA12891	NormPond-544932	G	A	CGA	68	0	26	0	0	0	0	100
NA12891	NormPond-544932	G	A	CGC	120	0	141	0	0	0	0	100
NA12891	NormPond-544932	G	A	CGG	222	0	133	0	0	0	0	100
NA12891	NormPond-544932	G	A	CGT	26	0	101	37	0	0.268116	0	100
NA12891	NormPond-544932	G	A	GGA	1870	0	1146	0	0	0	0	100
NA12891	NormPond-544932	G	A	GGC	714	0	681	0	0	0	0	100
NA12891	NormPond-544932	G	A	GGG	945	0	852	0	0	0	0	100
NA12891	NormPond-544932	G	A	GGT	595	1	542	0	0.001678	0	0.001678	28
NA12891	NormPond-544932	G	A	TGA	1092	0	1095	0	0	0	0	100
NA12891	NormPond-544932	G	A	TGC	766	0	889	0	0	0	0	100
NA12891	NormPond-544932	G	A	TGG	1507	0	1060	0	0	0	0	100
NA12891	NormPond-544932	G	A	TGT	1146	1	1304	0	0.000872	0	0.000872	31
NA12891	NormPond-544932	G	C	AGA	1768	0	912	35	0	0.036959	0	100
NA12891	NormPond-544932	G	C	AGC	690	0	591	0	0	0	0	100
NA12891	NormPond-544932	G	C	AGG	1440	0	1154	0	0	0	0	100
NA12891	NormPond-544932	G	C	AGT	1126	0	641	0	0	0	0	100
NA12891	NormPond-544932	G	C	CGA	68	0	26	0	0	0	0	100
NA12891	NormPond-544932	G	C	CGC	120	0	141	0	0	0	0	100
NA12891	NormPond-544932	G	C	CGG	222	0	133	0	0	0	0	100
NA12891	NormPond-544932	G	C	CGT	26	0	101	0	0	0	0	100
NA12891	NormPond-544932	G	C	GGA	1870	0	1146	0	0	0	0	100
NA12891	NormPond-544932	G	C	GGC	714	0	681	0	0	0	0	100
NA12891	NormPond-544932	G	C	GGG	945	0	852	0	0	0	0	100
NA12891	NormPond-544932	G	C	GGT	595	0	542	0	0	0	0	100
NA12891	NormPond-544932	G	C	TGA	1092	0	1095	0	0	0	0	100
NA12891	NormPond-544932	G	C	TGC	766	0	889	0	0	0	0	100
NA12891	NormPond-544932	G	C	TGG	1507	0	1060	0	0	0	0	100
NA12891	NormPond-544932	G	C	TGT	1146	0	1304	0	0	0	0	100
NA12891	NormPond-544932	G	T	AGA	1768	0	912	1	0	0.001095	0	100
NA12891	NormPond-544932	G	T	AGC	690	0	591	0	0	0	0	100
NA12891	NormPond-544932	G	T	AGG	1440	1	1154	0	0.000694	0	0.000694	32
NA12891	NormPond-544932	G	T	AGT	1126	0	641	0	0	0	0	100
NA12891	NormPond-544932	G	T	CGA	68	0	26	0	0	0	0	100
NA12891	NormPond-544932	G	T	CGC	120	0	141	0	0	0	0	100
NA12891	NormPond-544932	G	T	CGG	222	0	133	0	0	0	0	100
NA12891	NormPond-544932	G	T	CGT	26	0	101	0	0	0	0	100
NA12891	NormPond-544932	G	T	GGA	1870	1	1146	0	0.000534	0	0.000534	33
NA12891	NormPond-544932	G	T	GGC	714	0	681	0	0	0	0	100
NA12891	NormPond-544932	G	T	GGG	945	0	852	1	0	0.001172	0	100
NA12891	NormPond-544932	G	T	GGT	595	0	542	0	0	0	0	100
NA12891	NormPond-544932	G	T	TGA	1092	0	1095	1	0	0.000912	0	100
NA12891	NormPond-544932	G	T	TGC	766	0	889	1	0	0.001124	0	100
NA12891	NormPond-544932	G	T	TGG	1507	9	1060	0	0.005937	0	0.005937	22
NA12891	NormPond-544932	G	T	TGT	1146	0	1304	0	0	0	0	100
NA12891	NormPond-544932	T	A	ATA	988	1	752	0	0.001011	0	0.001011	30
NA12891	NormPond-544932	T	A	ATC	894	0	1045	0	0	0	0	100
NA12891	NormPond-544932	T	A	ATG	1423	0	1220	1	0	0.000819	0	100
NA12891	NormPond-544932	T	A	ATT	1102	0	1413	0	0	0	0	100
NA12891	NormPond-544932	T	A	CTA	622	0	684	0	0	0	0	100
NA12891	NormPond-544932	T	A	CTC	759	0	1170	0	0	0	0	100
NA12891	NormPond-544932	T	A	CTG	1085	0	1164	0	0	0	0	100
NA12891	NormPond-544932	T	A	CTT	839	0	1916	0	0	0	0	100
NA12891	NormPond-544932	T	A	GTA	510	0	504	0	0	0	0	100
NA12891	NormPond-544932	T	A	GTC	451	0	475	0	0	0	0	100
NA12891	NormPond-544932	T	A	GTG	979	0	856	0	0	0	0	100
NA12891	NormPond-544932	T	A	GTT	862	0	747	0	0	0	0	100
NA12891	NormPond-544932	T	A	TTA	813	0	1016	1	0	0.000983	0	100
NA12891	NormPond-544932	T	A	TTC	1062	0	1977	0	0	0	0	100
NA12891	NormPond-544932	T	A	TTG	914	1	1061	0	0.001093	0	0.001093	30
NA12891	NormPond-544932	T	A	TTT	1671	0	2386	0	0	0	0	100
NA12891	NormPond-544932	T	C	ATA	988	1	752	0	0.001011	0	0.001011	30
NA12891	NormPond-544932	T	C	ATC	894	0	1045	0	0	0	0	100
NA12891	NormPond-544932	T	C	ATG	1423	0	1220	17	0	0.013743	0	100
NA12891	NormPond-544932	T	C	ATT	1102	0	1413	0	0	0	0	100
NA12891	NormPond-544932	T	C	CTA	622	0	684	0	0	0	0	100
NA12891	NormPond-544932	T	C	CTC	759	0	1170	0	0	0	0	100
NA12891	NormPond-544932	T	C	CTG	1085	0	1164	0	0	0	0	100
NA12891	NormPond-544932	T	C	CTT	839	0	1916	1	0	0.000522	0	100
NA12891	NormPond-544932	T	C	GTA	510	0	504	0	0	0	0	100
NA12891	NormPond-544932	T	C	GTC	451	0	475	0	0	0	0	100
NA12891	NormPond-544932	T	C	GTG	979	0	856	0	0	0	0	100
NA12891	NormPond-544932	T	C	GTT	862	0	747	0	0	0	0	100
NA12891	NormPond-544932	T	C	TTA	813	0	1016	0	0	0	0	100
NA12891	NormPond-544932	T	C	TTC	1062	0	1977	9	0	0.004532	0	100
NA12891	NormPond-544932	T	C	TTG	914	0	1061	0	0	0	0	100
NA12891	NormPond-544932	T	C	TTT	1671	0	2386	0	0	0	0	100
NA12891	NormPond-544932	T	G	ATA	988	0	752	0	0	0	0	100
NA12891	NormPond-544932	T	G	ATC	894	1	1045	0	0.001117	0	0.001117	30
NA12891	NormPond-544932	T	G	ATG	1423	1	1220	1	0.000702	0.000819	0	100
NA12891	NormPond-544932	T	G	ATT	1102	0	1413	0	0	0	0	100
NA12891	NormPond-544932	T	G	CTA	622	1	684	0	0.001605	0	0.001605	28
NA12891	NormPond-544932	T	G	CTC	759	0	1170	0	0	0	0	100
NA12891	NormPond-544932	T	G	CTG	1085	0	1164	0	0	0	0	100
NA12891	NormPond-544932	T	G	CTT	839	1	1916	1	0.00119	0.000522	0.000669	32
NA12891	NormPond-544932	T	G	GTA	510	1	504	0	0.001957	0	0.001957	27
NA12891	NormPond-544932	T	G	GTC	451	0	475	0	0	0	0	100
NA12891	NormPond-544932	T	G	GTG	979	0	856	1	0	0.001167	0	100
NA12891	NormPond-544932	T	G	GTT	862	0	747	0	0	0	0	100
NA12891	NormPond-544932	T	G	TTA	813	0	1016	0	0	0	0	100
NA12891	NormPond-544932	T	G	TTC	1062	0	1977	0	0	0	0	100
NA12891	NormPond-544932	T	G	TTG	914	0	1061	8	0	0.007484	0	100
NA12891	NormPond-544932	T	G	TTT	1671	1	2386	1	0.000598	0.000419	0.000179	37


