## htsjdk.samtools.metrics.StringHeader
# CollectMultipleMetrics INPUT=in/sample.bam OUTPUT=picard/cmm METRIC_ACCUMULATION_LEVEL=[ALL_READS, LIBRARY, SAMPLE, READ_GROUP] PROGRAM=[CollectAlignmentSummaryMetrics, CollectBaseDistributionByCycle, CollectGcBiasMetrics, CollectInsertSizeMetrics, CollectQualityYieldMetrics, CollectSequencingArtifactMetrics, MeanQualityByCycle, QualityScoreDistribution] REFERENCE_SEQUENCE=in/reference.shifted.for.crams.fasta    ASSUME_SORTED=true STOP_AFTER=0 INCLUDE_UNPAIRED=false DO_NOT_CREATE_PLOTS=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:42:13 HST 2026

## METRICS CLASS	picard.analysis.GcBiasSummaryMetrics
ACCUMULATION_LEVEL	READS_USED	WINDOW_SIZE	TOTAL_CLUSTERS	ALIGNED_READS	AT_DROPOUT	GC_DROPOUT	GC_NC_0_19	GC_NC_20_39	GC_NC_40_59	GC_NC_60_79	GC_NC_80_100	SAMPLE	LIBRARY	READ_GROUP
All Reads	ALL	100	495	982	13.964192	11.95549	0	0.728357	1.191809	0	0			
Sample	ALL	100	495	982	13.964192	11.95549	0	0.728357	1.191809	0	0	NA12891		
Library	ALL	100	264	539	13.791095	12.212245	0	0.764162	1.167257	0	0		Pond-492101	
Library	ALL	100	231	443	15.506628	11.643095	0	0.684793	1.221683	0	0		NormPond-544932	
Read Group	ALL	100	264	539	13.791095	12.212245	0	0.764162	1.167257	0	0			NA12891.r1
Read Group	ALL	100	231	443	15.506628	11.643095	0	0.684793	1.221683	0	0			NA12891.r2


