## htsjdk.samtools.metrics.StringHeader
# CollectMultipleMetrics INPUT=in/sample.bam OUTPUT=picard/cmm METRIC_ACCUMULATION_LEVEL=[ALL_READS, LIBRARY, SAMPLE, READ_GROUP] PROGRAM=[CollectAlignmentSummaryMetrics, CollectBaseDistributionByCycle, CollectGcBiasMetrics, CollectInsertSizeMetrics, CollectQualityYieldMetrics, CollectSequencingArtifactMetrics, MeanQualityByCycle, QualityScoreDistribution] REFERENCE_SEQUENCE=in/reference.shifted.for.crams.fasta    ASSUME_SORTED=true STOP_AFTER=0 INCLUDE_UNPAIRED=false DO_NOT_CREATE_PLOTS=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:42:13 HST 2026

## METRICS CLASS	picard.analysis.artifacts.SequencingArtifactMetrics$PreAdapterDetailMetrics
SAMPLE_ALIAS	LIBRARY	REF_BASE	ALT_BASE	CONTEXT	PRO_REF_BASES	PRO_ALT_BASES	CON_REF_BASES	CON_ALT_BASES	ERROR_RATE	QSCORE
NA12891	Pond-492101	A	C	AAA	2459	3	2666	2	0.000195	37
NA12891	Pond-492101	A	C	AAC	923	0	1025	0	0	100
NA12891	Pond-492101	A	C	AAG	1902	2	1607	1	0.000285	35
NA12891	Pond-492101	A	C	AAT	1464	1	1403	1	0	100
NA12891	Pond-492101	A	C	CAA	1168	1	1173	6	0	100
NA12891	Pond-492101	A	C	CAC	1017	1	1108	1	0	100
NA12891	Pond-492101	A	C	CAG	1295	1	1401	0	0.000371	34
NA12891	Pond-492101	A	C	CAT	1467	2	1778	2	0	100
NA12891	Pond-492101	A	C	GAA	2036	1	1761	4	0	100
NA12891	Pond-492101	A	C	GAC	622	0	526	0	0	100
NA12891	Pond-492101	A	C	GAG	1123	3	1306	0	0.001234	29
NA12891	Pond-492101	A	C	GAT	1379	1	1110	1	0	100
NA12891	Pond-492101	A	C	TAA	1079	1	1109	3	0	100
NA12891	Pond-492101	A	C	TAC	642	0	567	1	0	100
NA12891	Pond-492101	A	C	TAG	777	0	767	0	0	100
NA12891	Pond-492101	A	C	TAT	1091	0	1145	0	0	100
NA12891	Pond-492101	A	G	AAA	2459	0	2666	2	0	100
NA12891	Pond-492101	A	G	AAC	923	0	1025	0	0	100
NA12891	Pond-492101	A	G	AAG	1902	2	1607	1	0.000285	35
NA12891	Pond-492101	A	G	AAT	1464	1	1403	2	0	100
NA12891	Pond-492101	A	G	CAA	1168	0	1173	0	0	100
NA12891	Pond-492101	A	G	CAC	1017	0	1108	0	0	100
NA12891	Pond-492101	A	G	CAG	1295	1	1401	0	0.000371	34
NA12891	Pond-492101	A	G	CAT	1467	8	1778	12	0	100
NA12891	Pond-492101	A	G	GAA	2036	12	1761	8	0.001048	30
NA12891	Pond-492101	A	G	GAC	622	0	526	0	0	100
NA12891	Pond-492101	A	G	GAG	1123	1	1306	0	0.000412	34
NA12891	Pond-492101	A	G	GAT	1379	1	1110	0	0.000402	34
NA12891	Pond-492101	A	G	TAA	1079	0	1109	0	0	100
NA12891	Pond-492101	A	G	TAC	642	0	567	0	0	100
NA12891	Pond-492101	A	G	TAG	777	0	767	0	0	100
NA12891	Pond-492101	A	G	TAT	1091	0	1145	0	0	100
NA12891	Pond-492101	A	T	AAA	2459	0	2666	0	0	100
NA12891	Pond-492101	A	T	AAC	923	0	1025	0	0	100
NA12891	Pond-492101	A	T	AAG	1902	0	1607	0	0	100
NA12891	Pond-492101	A	T	AAT	1464	0	1403	0	0	100
NA12891	Pond-492101	A	T	CAA	1168	0	1173	0	0	100
NA12891	Pond-492101	A	T	CAC	1017	1	1108	0	0.00047	33
NA12891	Pond-492101	A	T	CAG	1295	0	1401	0	0	100
NA12891	Pond-492101	A	T	CAT	1467	0	1778	0	0	100
NA12891	Pond-492101	A	T	GAA	2036	0	1761	0	0	100
NA12891	Pond-492101	A	T	GAC	622	0	526	0	0	100
NA12891	Pond-492101	A	T	GAG	1123	0	1306	0	0	100
NA12891	Pond-492101	A	T	GAT	1379	0	1110	0	0	100
NA12891	Pond-492101	A	T	TAA	1079	0	1109	0	0	100
NA12891	Pond-492101	A	T	TAC	642	0	567	0	0	100
NA12891	Pond-492101	A	T	TAG	777	0	767	0	0	100
NA12891	Pond-492101	A	T	TAT	1091	0	1145	0	0	100
NA12891	Pond-492101	C	A	ACA	1465	2	1469	2	0	100
NA12891	Pond-492101	C	A	ACC	659	0	725	0	0	100
NA12891	Pond-492101	C	A	ACG	81	0	74	0	0	100
NA12891	Pond-492101	C	A	ACT	1053	0	1023	0	0	100
NA12891	Pond-492101	C	A	CCA	1432	2	1649	7	0	100
NA12891	Pond-492101	C	A	CCC	1071	0	1090	0	0	100
NA12891	Pond-492101	C	A	CCG	208	0	233	0	0	100
NA12891	Pond-492101	C	A	CCT	1529	1	1747	0	0.000305	35
NA12891	Pond-492101	C	A	GCA	954	0	1025	0	0	100
NA12891	Pond-492101	C	A	GCC	777	0	787	0	0	100
NA12891	Pond-492101	C	A	GCG	166	0	153	0	0	100
NA12891	Pond-492101	C	A	GCT	754	0	717	0	0	100
NA12891	Pond-492101	C	A	TCA	1217	0	1374	0	0	100
NA12891	Pond-492101	C	A	TCC	1725	0	2152	1	0	100
NA12891	Pond-492101	C	A	TCG	49	0	48	0	0	100
NA12891	Pond-492101	C	A	TCT	1787	0	1681	0	0	100
NA12891	Pond-492101	C	G	ACA	1465	0	1469	0	0	100
NA12891	Pond-492101	C	G	ACC	659	1	725	0	0.000722	31
NA12891	Pond-492101	C	G	ACG	81	0	74	0	0	100
NA12891	Pond-492101	C	G	ACT	1053	0	1023	0	0	100
NA12891	Pond-492101	C	G	CCA	1432	0	1649	1	0	100
NA12891	Pond-492101	C	G	CCC	1071	0	1090	0	0	100
NA12891	Pond-492101	C	G	CCG	208	0	233	0	0	100
NA12891	Pond-492101	C	G	CCT	1529	0	1747	0	0	100
NA12891	Pond-492101	C	G	GCA	954	0	1025	0	0	100
NA12891	Pond-492101	C	G	GCC	777	0	787	0	0	100
NA12891	Pond-492101	C	G	GCG	166	0	153	0	0	100
NA12891	Pond-492101	C	G	GCT	754	0	717	0	0	100
NA12891	Pond-492101	C	G	TCA	1217	0	1374	0	0	100
NA12891	Pond-492101	C	G	TCC	1725	0	2152	0	0	100
NA12891	Pond-492101	C	G	TCG	49	0	48	0	0	100
NA12891	Pond-492101	C	G	TCT	1787	16	1681	22	0	100
NA12891	Pond-492101	C	T	ACA	1465	0	1469	0	0	100
NA12891	Pond-492101	C	T	ACC	659	0	725	0	0	100
NA12891	Pond-492101	C	T	ACG	81	25	74	17	0.040609	14
NA12891	Pond-492101	C	T	ACT	1053	0	1023	0	0	100
NA12891	Pond-492101	C	T	CCA	1432	0	1649	0	0	100
NA12891	Pond-492101	C	T	CCC	1071	0	1090	0	0	100
NA12891	Pond-492101	C	T	CCG	208	0	233	0	0	100
NA12891	Pond-492101	C	T	CCT	1529	9	1747	9	0	100
NA12891	Pond-492101	C	T	GCA	954	0	1025	0	0	100
NA12891	Pond-492101	C	T	GCC	777	1	787	0	0.000639	32
NA12891	Pond-492101	C	T	GCG	166	0	153	0	0	100
NA12891	Pond-492101	C	T	GCT	754	0	717	0	0	100
NA12891	Pond-492101	C	T	TCA	1217	0	1374	0	0	100
NA12891	Pond-492101	C	T	TCC	1725	0	2152	1	0	100
NA12891	Pond-492101	C	T	TCG	49	0	48	0	0	100
NA12891	Pond-492101	C	T	TCT	1787	0	1681	1	0	100
NA12891	Pond-492101	G	A	AGA	1681	1	1787	0	0.000288	35
NA12891	Pond-492101	G	A	AGC	717	0	754	0	0	100
NA12891	Pond-492101	G	A	AGG	1747	9	1529	9	0	100
NA12891	Pond-492101	G	A	AGT	1023	0	1053	0	0	100
NA12891	Pond-492101	G	A	CGA	48	0	49	0	0	100
NA12891	Pond-492101	G	A	CGC	153	0	166	0	0	100
NA12891	Pond-492101	G	A	CGG	233	0	208	0	0	100
NA12891	Pond-492101	G	A	CGT	74	17	81	25	0	100
NA12891	Pond-492101	G	A	GGA	2152	1	1725	0	0.000258	36
NA12891	Pond-492101	G	A	GGC	787	0	777	1	0	100
NA12891	Pond-492101	G	A	GGG	1090	0	1071	0	0	100
NA12891	Pond-492101	G	A	GGT	725	0	659	0	0	100
NA12891	Pond-492101	G	A	TGA	1374	0	1217	0	0	100
NA12891	Pond-492101	G	A	TGC	1025	0	954	0	0	100
NA12891	Pond-492101	G	A	TGG	1649	0	1432	0	0	100
NA12891	Pond-492101	G	A	TGT	1469	0	1465	0	0	100
NA12891	Pond-492101	G	C	AGA	1681	22	1787	16	0.001711	28
NA12891	Pond-492101	G	C	AGC	717	0	754	0	0	100
NA12891	Pond-492101	G	C	AGG	1747	0	1529	0	0	100
NA12891	Pond-492101	G	C	AGT	1023	0	1053	0	0	100
NA12891	Pond-492101	G	C	CGA	48	0	49	0	0	100
NA12891	Pond-492101	G	C	CGC	153	0	166	0	0	100
NA12891	Pond-492101	G	C	CGG	233	0	208	0	0	100
NA12891	Pond-492101	G	C	CGT	74	0	81	0	0	100
NA12891	Pond-492101	G	C	GGA	2152	0	1725	0	0	100
NA12891	Pond-492101	G	C	GGC	787	0	777	0	0	100
NA12891	Pond-492101	G	C	GGG	1090	0	1071	0	0	100
NA12891	Pond-492101	G	C	GGT	725	0	659	1	0	100
NA12891	Pond-492101	G	C	TGA	1374	0	1217	0	0	100
NA12891	Pond-492101	G	C	TGC	1025	0	954	0	0	100
NA12891	Pond-492101	G	C	TGG	1649	1	1432	0	0.000324	35
NA12891	Pond-492101	G	C	TGT	1469	0	1465	0	0	100
NA12891	Pond-492101	G	T	AGA	1681	0	1787	0	0	100
NA12891	Pond-492101	G	T	AGC	717	0	754	0	0	100
NA12891	Pond-492101	G	T	AGG	1747	0	1529	1	0	100
NA12891	Pond-492101	G	T	AGT	1023	0	1053	0	0	100
NA12891	Pond-492101	G	T	CGA	48	0	49	0	0	100
NA12891	Pond-492101	G	T	CGC	153	0	166	0	0	100
NA12891	Pond-492101	G	T	CGG	233	0	208	0	0	100
NA12891	Pond-492101	G	T	CGT	74	0	81	0	0	100
NA12891	Pond-492101	G	T	GGA	2152	1	1725	0	0.000258	36
NA12891	Pond-492101	G	T	GGC	787	0	777	0	0	100
NA12891	Pond-492101	G	T	GGG	1090	0	1071	0	0	100
NA12891	Pond-492101	G	T	GGT	725	0	659	0	0	100
NA12891	Pond-492101	G	T	TGA	1374	0	1217	0	0	100
NA12891	Pond-492101	G	T	TGC	1025	0	954	0	0	100
NA12891	Pond-492101	G	T	TGG	1649	7	1432	2	0.001618	28
NA12891	Pond-492101	G	T	TGT	1469	2	1465	2	0	100
NA12891	Pond-492101	T	A	ATA	1145	0	1091	0	0	100
NA12891	Pond-492101	T	A	ATC	1110	0	1379	0	0	100
NA12891	Pond-492101	T	A	ATG	1778	0	1467	0	0	100
NA12891	Pond-492101	T	A	ATT	1403	0	1464	0	0	100
NA12891	Pond-492101	T	A	CTA	767	0	777	0	0	100
NA12891	Pond-492101	T	A	CTC	1306	0	1123	0	0	100
NA12891	Pond-492101	T	A	CTG	1401	0	1295	0	0	100
NA12891	Pond-492101	T	A	CTT	1607	0	1902	0	0	100
NA12891	Pond-492101	T	A	GTA	567	0	642	0	0	100
NA12891	Pond-492101	T	A	GTC	526	0	622	0	0	100
NA12891	Pond-492101	T	A	GTG	1108	0	1017	1	0	100
NA12891	Pond-492101	T	A	GTT	1025	0	923	0	0	100
NA12891	Pond-492101	T	A	TTA	1109	0	1079	0	0	100
NA12891	Pond-492101	T	A	TTC	1761	0	2036	0	0	100
NA12891	Pond-492101	T	A	TTG	1173	0	1168	0	0	100
NA12891	Pond-492101	T	A	TTT	2666	0	2459	0	0	100
NA12891	Pond-492101	T	C	ATA	1145	0	1091	0	0	100
NA12891	Pond-492101	T	C	ATC	1110	0	1379	1	0	100
NA12891	Pond-492101	T	C	ATG	1778	12	1467	8	0.001225	29
NA12891	Pond-492101	T	C	ATT	1403	2	1464	1	0.000348	35
NA12891	Pond-492101	T	C	CTA	767	0	777	0	0	100
NA12891	Pond-492101	T	C	CTC	1306	0	1123	1	0	100
NA12891	Pond-492101	T	C	CTG	1401	0	1295	1	0	100
NA12891	Pond-492101	T	C	CTT	1607	1	1902	2	0	100
NA12891	Pond-492101	T	C	GTA	567	0	642	0	0	100
NA12891	Pond-492101	T	C	GTC	526	0	622	0	0	100
NA12891	Pond-492101	T	C	GTG	1108	0	1017	0	0	100
NA12891	Pond-492101	T	C	GTT	1025	0	923	0	0	100
NA12891	Pond-492101	T	C	TTA	1109	0	1079	0	0	100
NA12891	Pond-492101	T	C	TTC	1761	8	2036	12	0	100
NA12891	Pond-492101	T	C	TTG	1173	0	1168	0	0	100
NA12891	Pond-492101	T	C	TTT	2666	2	2459	0	0.00039	34
NA12891	Pond-492101	T	G	ATA	1145	0	1091	0	0	100
NA12891	Pond-492101	T	G	ATC	1110	1	1379	1	0	100
NA12891	Pond-492101	T	G	ATG	1778	2	1467	2	0	100
NA12891	Pond-492101	T	G	ATT	1403	1	1464	1	0	100
NA12891	Pond-492101	T	G	CTA	767	0	777	0	0	100
NA12891	Pond-492101	T	G	CTC	1306	0	1123	3	0	100
NA12891	Pond-492101	T	G	CTG	1401	0	1295	1	0	100
NA12891	Pond-492101	T	G	CTT	1607	1	1902	2	0	100
NA12891	Pond-492101	T	G	GTA	567	1	642	0	0.000826	31
NA12891	Pond-492101	T	G	GTC	526	0	622	0	0	100
NA12891	Pond-492101	T	G	GTG	1108	1	1017	1	0	100
NA12891	Pond-492101	T	G	GTT	1025	0	923	0	0	100
NA12891	Pond-492101	T	G	TTA	1109	3	1079	1	0.000912	30
NA12891	Pond-492101	T	G	TTC	1761	4	2036	1	0.000789	31
NA12891	Pond-492101	T	G	TTG	1173	6	1168	1	0.002129	27
NA12891	Pond-492101	T	G	TTT	2666	2	2459	3	0	100
NA12891	NormPond-544932	A	C	AAA	2060	2	1997	0	0.000493	33
NA12891	NormPond-544932	A	C	AAC	779	0	830	0	0	100
NA12891	NormPond-544932	A	C	AAG	1313	1	1442	1	0	100
NA12891	NormPond-544932	A	C	AAT	1234	0	1281	0	0	100
NA12891	NormPond-544932	A	C	CAA	983	4	992	4	0	100
NA12891	NormPond-544932	A	C	CAC	943	1	892	0	0.000545	33
NA12891	NormPond-544932	A	C	CAG	1097	0	1152	0	0	100
NA12891	NormPond-544932	A	C	CAT	1326	0	1317	2	0	100
NA12891	NormPond-544932	A	C	GAA	1414	0	1625	0	0	100
NA12891	NormPond-544932	A	C	GAC	452	0	474	0	0	100
NA12891	NormPond-544932	A	C	GAG	942	0	987	0	0	100
NA12891	NormPond-544932	A	C	GAT	976	0	963	1	0	100
NA12891	NormPond-544932	A	C	TAA	900	0	929	0	0	100
NA12891	NormPond-544932	A	C	TAC	524	0	490	1	0	100
NA12891	NormPond-544932	A	C	TAG	637	0	669	1	0	100
NA12891	NormPond-544932	A	C	TAT	894	0	846	0	0	100
NA12891	NormPond-544932	A	G	AAA	2060	0	1997	0	0	100
NA12891	NormPond-544932	A	G	AAC	779	0	830	0	0	100
NA12891	NormPond-544932	A	G	AAG	1313	0	1442	1	0	100
NA12891	NormPond-544932	A	G	AAT	1234	0	1281	0	0	100
NA12891	NormPond-544932	A	G	CAA	983	0	992	0	0	100
NA12891	NormPond-544932	A	G	CAC	943	0	892	0	0	100
NA12891	NormPond-544932	A	G	CAG	1097	0	1152	0	0	100
NA12891	NormPond-544932	A	G	CAT	1326	7	1317	10	0	100
NA12891	NormPond-544932	A	G	GAA	1414	4	1625	5	0	100
NA12891	NormPond-544932	A	G	GAC	452	0	474	0	0	100
NA12891	NormPond-544932	A	G	GAG	942	0	987	0	0	100
NA12891	NormPond-544932	A	G	GAT	976	0	963	0	0	100
NA12891	NormPond-544932	A	G	TAA	900	0	929	0	0	100
NA12891	NormPond-544932	A	G	TAC	524	0	490	0	0	100
NA12891	NormPond-544932	A	G	TAG	637	0	669	0	0	100
NA12891	NormPond-544932	A	G	TAT	894	1	846	0	0.000574	32
NA12891	NormPond-544932	A	T	AAA	2060	0	1997	0	0	100
NA12891	NormPond-544932	A	T	AAC	779	0	830	0	0	100
NA12891	NormPond-544932	A	T	AAG	1313	0	1442	0	0	100
NA12891	NormPond-544932	A	T	AAT	1234	0	1281	0	0	100
NA12891	NormPond-544932	A	T	CAA	983	0	992	1	0	100
NA12891	NormPond-544932	A	T	CAC	943	0	892	0	0	100
NA12891	NormPond-544932	A	T	CAG	1097	0	1152	0	0	100
NA12891	NormPond-544932	A	T	CAT	1326	0	1317	1	0	100
NA12891	NormPond-544932	A	T	GAA	1414	0	1625	0	0	100
NA12891	NormPond-544932	A	T	GAC	452	0	474	0	0	100
NA12891	NormPond-544932	A	T	GAG	942	0	987	0	0	100
NA12891	NormPond-544932	A	T	GAT	976	0	963	0	0	100
NA12891	NormPond-544932	A	T	TAA	900	0	929	1	0	100
NA12891	NormPond-544932	A	T	TAC	524	0	490	0	0	100
NA12891	NormPond-544932	A	T	TAG	637	0	669	0	0	100
NA12891	NormPond-544932	A	T	TAT	894	0	846	1	0	100
NA12891	NormPond-544932	C	A	ACA	1217	0	1233	0	0	100
NA12891	NormPond-544932	C	A	ACC	557	0	580	0	0	100
NA12891	NormPond-544932	C	A	ACG	69	0	58	0	0	100
NA12891	NormPond-544932	C	A	ACT	914	0	853	0	0	100
NA12891	NormPond-544932	C	A	CCA	1296	4	1271	5	0	100
NA12891	NormPond-544932	C	A	CCC	913	0	884	1	0	100
NA12891	NormPond-544932	C	A	CCG	178	0	177	0	0	100
NA12891	NormPond-544932	C	A	CCT	1388	1	1206	0	0.000385	34
NA12891	NormPond-544932	C	A	GCA	792	0	863	1	0	100
NA12891	NormPond-544932	C	A	GCC	725	0	670	0	0	100
NA12891	NormPond-544932	C	A	GCG	131	0	130	0	0	100
NA12891	NormPond-544932	C	A	GCT	653	0	628	0	0	100
NA12891	NormPond-544932	C	A	TCA	1148	1	1039	0	0.000457	33
NA12891	NormPond-544932	C	A	TCC	1605	1	1411	0	0.000331	35
NA12891	NormPond-544932	C	A	TCG	38	0	56	0	0	100
NA12891	NormPond-544932	C	A	TCT	1352	0	1328	1	0	100
NA12891	NormPond-544932	C	G	ACA	1217	0	1233	0	0	100
NA12891	NormPond-544932	C	G	ACC	557	0	580	0	0	100
NA12891	NormPond-544932	C	G	ACG	69	0	58	0	0	100
NA12891	NormPond-544932	C	G	ACT	914	0	853	0	0	100
NA12891	NormPond-544932	C	G	CCA	1296	0	1271	0	0	100
NA12891	NormPond-544932	C	G	CCC	913	0	884	0	0	100
NA12891	NormPond-544932	C	G	CCG	178	0	177	0	0	100
NA12891	NormPond-544932	C	G	CCT	1388	0	1206	0	0	100
NA12891	NormPond-544932	C	G	GCA	792	0	863	0	0	100
NA12891	NormPond-544932	C	G	GCC	725	0	670	0	0	100
NA12891	NormPond-544932	C	G	GCG	131	0	130	0	0	100
NA12891	NormPond-544932	C	G	GCT	653	0	628	0	0	100
NA12891	NormPond-544932	C	G	TCA	1148	0	1039	0	0	100
NA12891	NormPond-544932	C	G	TCC	1605	0	1411	0	0	100
NA12891	NormPond-544932	C	G	TCG	38	0	56	0	0	100
NA12891	NormPond-544932	C	G	TCT	1352	19	1328	16	0.001105	30
NA12891	NormPond-544932	C	T	ACA	1217	0	1233	1	0	100
NA12891	NormPond-544932	C	T	ACC	557	1	580	0	0.000879	31
NA12891	NormPond-544932	C	T	ACG	69	19	58	18	0.006098	22
NA12891	NormPond-544932	C	T	ACT	914	0	853	0	0	100
NA12891	NormPond-544932	C	T	CCA	1296	0	1271	0	0	100
NA12891	NormPond-544932	C	T	CCC	913	0	884	0	0	100
NA12891	NormPond-544932	C	T	CCG	178	0	177	0	0	100
NA12891	NormPond-544932	C	T	CCT	1388	9	1206	9	0	100
NA12891	NormPond-544932	C	T	GCA	792	0	863	0	0	100
NA12891	NormPond-544932	C	T	GCC	725	0	670	0	0	100
NA12891	NormPond-544932	C	T	GCG	131	0	130	0	0	100
NA12891	NormPond-544932	C	T	GCT	653	0	628	0	0	100
NA12891	NormPond-544932	C	T	TCA	1148	0	1039	0	0	100
NA12891	NormPond-544932	C	T	TCC	1605	0	1411	0	0	100
NA12891	NormPond-544932	C	T	TCG	38	0	56	0	0	100
NA12891	NormPond-544932	C	T	TCT	1352	2	1328	0	0.000746	31
NA12891	NormPond-544932	G	A	AGA	1328	0	1352	2	0	100
NA12891	NormPond-544932	G	A	AGC	628	0	653	0	0	100
NA12891	NormPond-544932	G	A	AGG	1206	9	1388	9	0	100
NA12891	NormPond-544932	G	A	AGT	853	0	914	0	0	100
NA12891	NormPond-544932	G	A	CGA	56	0	38	0	0	100
NA12891	NormPond-544932	G	A	CGC	130	0	131	0	0	100
NA12891	NormPond-544932	G	A	CGG	177	0	178	0	0	100
NA12891	NormPond-544932	G	A	CGT	58	18	69	19	0	100
NA12891	NormPond-544932	G	A	GGA	1411	0	1605	0	0	100
NA12891	NormPond-544932	G	A	GGC	670	0	725	0	0	100
NA12891	NormPond-544932	G	A	GGG	884	0	913	0	0	100
NA12891	NormPond-544932	G	A	GGT	580	0	557	1	0	100
NA12891	NormPond-544932	G	A	TGA	1039	0	1148	0	0	100
NA12891	NormPond-544932	G	A	TGC	863	0	792	0	0	100
NA12891	NormPond-544932	G	A	TGG	1271	0	1296	0	0	100
NA12891	NormPond-544932	G	A	TGT	1233	1	1217	0	0.000408	34
NA12891	NormPond-544932	G	C	AGA	1328	16	1352	19	0	100
NA12891	NormPond-544932	G	C	AGC	628	0	653	0	0	100
NA12891	NormPond-544932	G	C	AGG	1206	0	1388	0	0	100
NA12891	NormPond-544932	G	C	AGT	853	0	914	0	0	100
NA12891	NormPond-544932	G	C	CGA	56	0	38	0	0	100
NA12891	NormPond-544932	G	C	CGC	130	0	131	0	0	100
NA12891	NormPond-544932	G	C	CGG	177	0	178	0	0	100
NA12891	NormPond-544932	G	C	CGT	58	0	69	0	0	100
NA12891	NormPond-544932	G	C	GGA	1411	0	1605	0	0	100
NA12891	NormPond-544932	G	C	GGC	670	0	725	0	0	100
NA12891	NormPond-544932	G	C	GGG	884	0	913	0	0	100
NA12891	NormPond-544932	G	C	GGT	580	0	557	0	0	100
NA12891	NormPond-544932	G	C	TGA	1039	0	1148	0	0	100
NA12891	NormPond-544932	G	C	TGC	863	0	792	0	0	100
NA12891	NormPond-544932	G	C	TGG	1271	0	1296	0	0	100
NA12891	NormPond-544932	G	C	TGT	1233	0	1217	0	0	100
NA12891	NormPond-544932	G	T	AGA	1328	1	1352	0	0.000373	34
NA12891	NormPond-544932	G	T	AGC	628	0	653	0	0	100
NA12891	NormPond-544932	G	T	AGG	1206	0	1388	1	0	100
NA12891	NormPond-544932	G	T	AGT	853	0	914	0	0	100
NA12891	NormPond-544932	G	T	CGA	56	0	38	0	0	100
NA12891	NormPond-544932	G	T	CGC	130	0	131	0	0	100
NA12891	NormPond-544932	G	T	CGG	177	0	178	0	0	100
NA12891	NormPond-544932	G	T	CGT	58	0	69	0	0	100
NA12891	NormPond-544932	G	T	GGA	1411	0	1605	1	0	100
NA12891	NormPond-544932	G	T	GGC	670	0	725	0	0	100
NA12891	NormPond-544932	G	T	GGG	884	1	913	0	0.000556	33
NA12891	NormPond-544932	G	T	GGT	580	0	557	0	0	100
NA12891	NormPond-544932	G	T	TGA	1039	0	1148	1	0	100
NA12891	NormPond-544932	G	T	TGC	863	1	792	0	0.000604	32
NA12891	NormPond-544932	G	T	TGG	1271	5	1296	4	0.000388	34
NA12891	NormPond-544932	G	T	TGT	1233	0	1217	0	0	100
NA12891	NormPond-544932	T	A	ATA	846	1	894	0	0.000574	32
NA12891	NormPond-544932	T	A	ATC	963	0	976	0	0	100
NA12891	NormPond-544932	T	A	ATG	1317	1	1326	0	0.000378	34
NA12891	NormPond-544932	T	A	ATT	1281	0	1234	0	0	100
NA12891	NormPond-544932	T	A	CTA	669	0	637	0	0	100
NA12891	NormPond-544932	T	A	CTC	987	0	942	0	0	100
NA12891	NormPond-544932	T	A	CTG	1152	0	1097	0	0	100
NA12891	NormPond-544932	T	A	CTT	1442	0	1313	0	0	100
NA12891	NormPond-544932	T	A	GTA	490	0	524	0	0	100
NA12891	NormPond-544932	T	A	GTC	474	0	452	0	0	100
NA12891	NormPond-544932	T	A	GTG	892	0	943	0	0	100
NA12891	NormPond-544932	T	A	GTT	830	0	779	0	0	100
NA12891	NormPond-544932	T	A	TTA	929	1	900	0	0.000546	33
NA12891	NormPond-544932	T	A	TTC	1625	0	1414	0	0	100
NA12891	NormPond-544932	T	A	TTG	992	1	983	0	0.000506	33
NA12891	NormPond-544932	T	A	TTT	1997	0	2060	0	0	100
NA12891	NormPond-544932	T	C	ATA	846	0	894	1	0	100
NA12891	NormPond-544932	T	C	ATC	963	0	976	0	0	100
NA12891	NormPond-544932	T	C	ATG	1317	10	1326	7	0.001128	29
NA12891	NormPond-544932	T	C	ATT	1281	0	1234	0	0	100
NA12891	NormPond-544932	T	C	CTA	669	0	637	0	0	100
NA12891	NormPond-544932	T	C	CTC	987	0	942	0	0	100
NA12891	NormPond-544932	T	C	CTG	1152	0	1097	0	0	100
NA12891	NormPond-544932	T	C	CTT	1442	1	1313	0	0.000363	34
NA12891	NormPond-544932	T	C	GTA	490	0	524	0	0	100
NA12891	NormPond-544932	T	C	GTC	474	0	452	0	0	100
NA12891	NormPond-544932	T	C	GTG	892	0	943	0	0	100
NA12891	NormPond-544932	T	C	GTT	830	0	779	0	0	100
NA12891	NormPond-544932	T	C	TTA	929	0	900	0	0	100
NA12891	NormPond-544932	T	C	TTC	1625	5	1414	4	0.000328	35
NA12891	NormPond-544932	T	C	TTG	992	0	983	0	0	100
NA12891	NormPond-544932	T	C	TTT	1997	0	2060	0	0	100
NA12891	NormPond-544932	T	G	ATA	846	0	894	0	0	100
NA12891	NormPond-544932	T	G	ATC	963	1	976	0	0.000515	33
NA12891	NormPond-544932	T	G	ATG	1317	2	1326	0	0.000756	31
NA12891	NormPond-544932	T	G	ATT	1281	0	1234	0	0	100
NA12891	NormPond-544932	T	G	CTA	669	1	637	0	0.000765	31
NA12891	NormPond-544932	T	G	CTC	987	0	942	0	0	100
NA12891	NormPond-544932	T	G	CTG	1152	0	1097	0	0	100
NA12891	NormPond-544932	T	G	CTT	1442	1	1313	1	0	100
NA12891	NormPond-544932	T	G	GTA	490	1	524	0	0.000985	30
NA12891	NormPond-544932	T	G	GTC	474	0	452	0	0	100
NA12891	NormPond-544932	T	G	GTG	892	0	943	1	0	100
NA12891	NormPond-544932	T	G	GTT	830	0	779	0	0	100
NA12891	NormPond-544932	T	G	TTA	929	0	900	0	0	100
NA12891	NormPond-544932	T	G	TTC	1625	0	1414	0	0	100
NA12891	NormPond-544932	T	G	TTG	992	4	983	4	0	100
NA12891	NormPond-544932	T	G	TTT	1997	0	2060	2	0	100


