## htsjdk.samtools.metrics.StringHeader
# CollectMultipleMetrics INPUT=in/sample.bam OUTPUT=picard/cmm METRIC_ACCUMULATION_LEVEL=[ALL_READS, LIBRARY, SAMPLE, READ_GROUP] PROGRAM=[CollectAlignmentSummaryMetrics, CollectBaseDistributionByCycle, CollectGcBiasMetrics, CollectInsertSizeMetrics, CollectQualityYieldMetrics, CollectSequencingArtifactMetrics, MeanQualityByCycle, QualityScoreDistribution] REFERENCE_SEQUENCE=in/reference.shifted.for.crams.fasta    ASSUME_SORTED=true STOP_AFTER=0 INCLUDE_UNPAIRED=false DO_NOT_CREATE_PLOTS=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:42:13 HST 2026


## HISTOGRAM	java.lang.Byte
QUALITY	COUNT_OF_Q	COUNT_OF_OQ
1	2	0
2	5027	5016
3	50	0
4	88	0
5	164	0
6	248	0
7	337	134
8	374	125
9	438	0
10	324	0
11	449	2820
12	493	1980
13	625	0
14	604	0
15	539	0
16	538	0
17	512	0
18	448	0
19	479	0
20	621	0
21	786	0
22	1158	3609
23	1652	0
24	2167	0
25	2453	0
26	3494	0
27	6625	4809
28	20612	0
29	43955	0
30	32642	0
31	15674	0
32	4311	11516
33	637	0
34	6	0
35	1	0
37	0	21791
41	0	44008
42	0	52725

